downloading reverse dependencies ... downloading CDMConnector_1.5.0.tar.gz ... ok downloading CodelistGenerator_3.1.0.tar.gz ... ok downloading CohortCharacteristics_0.2.2.tar.gz ... ok downloading CohortConstructor_0.2.2.tar.gz ... ok downloading CohortSurvival_0.5.2.tar.gz ... ok downloading CohortSymmetry_0.1.2.tar.gz ... ok downloading DrugExposureDiagnostics_1.0.8.tar.gz ... ok downloading DrugUtilisation_0.7.1.tar.gz ... ok downloading IncidencePrevalence_0.7.4.tar.gz ... ok downloading omock_0.3.0.tar.gz ... ok downloading PatientProfiles_1.2.0.tar.gz ... ok downloading visOmopResults_0.3.0.tar.gz ... ok installing dependencies ‘CirceR’, ‘CodelistGenerator’, ‘CohortSurvival’, ‘DatabaseConnector’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘jsonlite’, ‘magick’, ‘omock’, ‘omopgenerics’, ‘PaRe’, ‘PatientProfiles’, ‘visOmopResults’ Warning: package ‘PaRe’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘CirceR’ begin installing package ‘DatabaseConnector’ begin installing package ‘jsonlite’ begin installing package ‘omopgenerics’ begin installing package ‘magick’ * installing *source* package ‘CirceR’ ... ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2dvJxd/R.INSTALL2168454e4b21b9/jsonlite/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_array.c -o collapse_array.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_object.c -o collapse_object.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse_pretty.c -o collapse_pretty.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape_chars.c -o escape_chars.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c integer64_to_na.c -o integer64_to_na.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_datelist.c -o is_datelist.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_recordlist.c -o is_recordlist.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c is_scalarlist.c -o is_scalarlist.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modp_numtoa.c -o modp_numtoa.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c null_to_na.c -o null_to_na.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c num_to_char.c -o num_to_char.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parse.c -o parse.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prettify.c -o prettify.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c push_parser.c -o push_parser.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-base64.c -o r-base64.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c row_collapse.c -o row_collapse.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transpose_list.c -o transpose_list.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validate.c -o validate.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl.c -o yajl/yajl.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2dvJxd/R.INSTALL2168454e4b21b9/jsonlite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) * installing *source* package ‘omopgenerics’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omopgenerics) begin installing package ‘visOmopResults’ begin installing package ‘omock’ * installing *source* package ‘DatabaseConnector’ ... ** package ‘DatabaseConnector’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DatabaseConnector) * installing *source* package ‘omock’ ... ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘visOmopResults’ ... ** package ‘visOmopResults’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visOmopResults) begin installing package ‘PatientProfiles’ * installing *source* package ‘PatientProfiles’ ... ** package ‘PatientProfiles’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PatientProfiles) begin installing package ‘CodelistGenerator’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortSurvival’ * installing *source* package ‘CohortSurvival’ ... ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CodelistGenerator’ ... ** package ‘CodelistGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CodelistGenerator) begin installing package ‘DrugUtilisation’ * installing *source* package ‘IncidencePrevalence’ ... ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘DrugUtilisation’ ... ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘magick’ ... ** package ‘magick’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 Using PKG_LIBS=-lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYCRviE/R.INSTALL21684a2c7c54ce/magick/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c animation.cpp -o animation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c attributes.cpp -o attributes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c base.cpp -o base.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c color.cpp -o color.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c composite.cpp -o composite.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c config.cc -o config.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c convolve.cpp -o convolve.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c device.cpp -o device.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c edges.cpp -o edges.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c edit.cpp -o edit.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c fonts.cpp -o fonts.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c options.cpp -o options.o options.cpp: In function ‘Rcpp::DataFrame list_font_info()’: options.cpp:37:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 37 | for (int i = 0; i < number_fonts; i++){ | ~~^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c properties.cpp -o properties.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c resize.cpp -o resize.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c segment.cpp -o segment.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-6 -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c transformations.cpp -o transformations.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYCRviE/R.INSTALL21684a2c7c54ce/magick/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) checking omopgenerics_0.3.1.tar.gz ... checking CDMConnector_1.5.0.tar.gz ... checking CohortCharacteristics_0.2.2.tar.gz ... checking CodelistGenerator_3.1.0.tar.gz ... checking CohortConstructor_0.2.2.tar.gz ... checking CohortSurvival_0.5.2.tar.gz ... checking CohortSymmetry_0.1.2.tar.gz ... checking DrugExposureDiagnostics_1.0.8.tar.gz ... checking DrugUtilisation_0.7.1.tar.gz ... checking IncidencePrevalence_0.7.4.tar.gz ... checking omock_0.3.0.tar.gz ... checking PatientProfiles_1.2.0.tar.gz ... checking visOmopResults_0.3.0.tar.gz ... Depends: Package: omopgenerics Depends: R (>= 4.1) Imports: cli, dbplyr, dplyr, glue, lifecycle, methods, purrr, rlang, snakecase, stringr, tidyr, vctrs Timings: user system elapsed omopgenerics 120.224 6.328 101.318 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 2 10 Check results summary: omopgenerics ... OK rdepends_CDMConnector ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... ERROR * checking tests ... [325s/171s] ERROR rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... ERROR * checking re-building of vignette outputs ... [273s/278s] ERROR rdepends_DrugExposureDiagnostics ... OK rdepends_DrugUtilisation ... OK rdepends_IncidencePrevalence ... OK rdepends_omock ... OK rdepends_PatientProfiles ... OK rdepends_visOmopResults ... OK Check results changes: Package: CohortConstructor Check: tests New result: ERROR Package: CohortSymmetry Check: re-building of vignette outputs New result: ERROR