Package: CohortConstructor
Check: tests
New result: ERROR
    Running ‘testthat.R’ [325s/171s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/tests.html
    > # * https://testthat.r-lib.org/reference/test_package.html#special-files
    > 
    > library(testthat)
    > library(CohortConstructor)
    > 
    > test_check("CohortConstructor")
    Starting 2 test processes
    [ FAIL 41 | WARN 152 | SKIP 51 | PASS 192 ]
    
    ══ Skipped tests (51) ══════════════════════════════════════════════════════════
    • On CRAN (51): 'test-conceptCohort.R:137:3', 'test-conceptCohort.R:209:3',
      'test-conceptCohort.R:237:3', 'test-conceptCohort.R:284:3',
      'test-conceptCohort.R:430:3', 'test-entryAtColumnDate.R:2:3',
      'test-entryAtColumnDate.R:58:3', 'test-exitAtColumnDate.R:2:3',
      'test-exitAtColumnDate.R:62:3', 'test-exitAtColumnDate.R:119:3',
      'test-collapseCohorts.R:95:3', 'test-intersectCohorts.R:13:3',
      'test-intersectCohorts.R:77:3', 'test-intersectCohorts.R:122:3',
      'test-intersectCohorts.R:221:3', 'test-intersectCohorts.R:332:3',
      'test-intersectCohorts.R:373:3', 'test-exitAtDate.R:36:3',
      'test-measurementCohort.R:209:3', 'test-requireCohortIntersect.R:144:3',
      'test-requireCohortIntersect.R:180:3',
      'test-requireConceptIntersect.R:114:3',
      'test-requireConceptIntersect.R:195:3', 'test-requireDateRange.R:2:3',
      'test-requireDateRange.R:102:3', 'test-requireDeathFlag.R:2:3',
      'test-requireDeathFlag.R:78:3', 'test-requireDemographics.R:2:3',
      'test-requireDemographics.R:130:3', 'test-requireDemographics.R:177:3',
      'test-requireDemographics.R:216:3', 'test-requireDemographics.R:241:3',
      'test-requireDemographics.R:265:3', 'test-requireDemographics.R:414:3',
      'test-requireDemographics.R:463:3', 'test-requireDemographics.R:495:3',
      'test-requireIsFirstEntry.R:24:3', 'test-requireIsFirstEntry.R:64:3',
      'test-requireIsFirstEntry.R:88:3', 'test-requireTableIntersect.R:2:3',
      'test-requireTableIntersect.R:102:3', 'test-requireTableIntersect.R:183:3',
      'test-subsetCohorts.R:49:3', 'test-subsetCohorts.R:98:3',
      'test-subsetCohorts.R:117:3', 'test-trimDemographics.R:2:3',
      'test-trimDemographics.R:328:3', 'test-unionCohorts.R:143:3',
      'test-unionCohorts.R:198:3', 'test-yearCohorts.R:2:3',
      'test-yearCohorts.R:122:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-exitAtDate.R:9:3'): exit at observation end ──────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-exitAtDate.R:11:3'): exit at observation end ─────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-exitAtDate.R:13:3'): exit at observation end ─────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-exitAtDate.R:17:3'): exit at observation end ─────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-exitAtDate.R:19:3'): exit at observation end ─────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-exitAtDate.R:21:3'): exit at observation end ─────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-measurementCohort.R:42:3'): mearurementCohorts works ─────────
    collectCohort(cdm$cohort, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:    
    `attr(expected, 'row.names')`: 1 2
    
      `actual$subject_id`:    
    `expected$subject_id`: 1 3
    
    `actual$cohort_start_date`:                            
    `expected$cohort_start_date`: "2000-07-01" "2015-02-19"
    
    `actual$cohort_end_date`:                            
    `expected$cohort_end_date`: "2000-07-01" "2015-02-19"
    ── Failure ('test-measurementCohort.R:69:3'): mearurementCohorts works ─────────
    collectCohort(cdm$cohort3, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:    
    `attr(expected, 'row.names')`: 1 2
    
      `actual$subject_id`:    
    `expected$subject_id`: 1 3
    
    `actual$cohort_start_date`:                            
    `expected$cohort_start_date`: "2000-07-01" "2015-02-19"
    
    `actual$cohort_end_date`:                            
    `expected$cohort_end_date`: "2000-07-01" "2015-02-19"
    ── Failure ('test-measurementCohort.R:87:3'): mearurementCohorts works ─────────
    collectCohort(cdm$cohort4, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:          
    `attr(expected, 'row.names')`: 1 2 3 4 5
    
      `actual$subject_id`:          
    `expected$subject_id`: 1 1 2 3 3
    
     actual$cohort_start_date | expected$cohort_start_date    
                              - "2000-07-01"               [1]
                              - "2000-12-11"               [2]
                              - "2002-09-08"               [3]
                              - "2015-02-19"               [4]
                              - "2015-02-20"               [5]
    
     actual$cohort_end_date | expected$cohort_end_date    
                            - "2000-07-01"             [1]
                            - "2000-12-11"             [2]
                            - "2002-09-08"             [3]
                            - "2015-02-19"             [4]
                            - "2015-02-20"             [5]
    ── Failure ('test-measurementCohort.R:106:3'): mearurementCohorts works ────────
    collectCohort(cdm$cohort5, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:  
    `attr(expected, 'row.names')`: 1
    
      `actual$subject_id`:  
    `expected$subject_id`: 1
    
    `actual$cohort_start_date`:               
    `expected$cohort_start_date`: "2000-07-01"
    
    `actual$cohort_end_date`:               
    `expected$cohort_end_date`: "2000-07-01"
    ── Failure ('test-measurementCohort.R:125:3'): mearurementCohorts works ────────
    collectCohort(cdm$cohort6, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:    
    `attr(expected, 'row.names')`: 1 2
    
      `actual$subject_id`:    
    `expected$subject_id`: 3 3
    
    `actual$cohort_start_date`:                            
    `expected$cohort_start_date`: "2015-02-19" "2015-02-20"
    
    `actual$cohort_end_date`:                            
    `expected$cohort_end_date`: "2015-02-19" "2015-02-20"
    ── Failure ('test-measurementCohort.R:143:3'): mearurementCohorts works ────────
    collectCohort(cdm$cohort7, 1) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:  
    `attr(expected, 'row.names')`: 1
    
      `actual$subject_id`:  
    `expected$subject_id`: 1
    
    `actual$cohort_start_date`:               
    `expected$cohort_start_date`: "2000-07-01"
    
    `actual$cohort_end_date`:               
    `expected$cohort_end_date`: "2000-07-01"
    ── Failure ('test-measurementCohort.R:150:3'): mearurementCohorts works ────────
    collectCohort(cdm$cohort7, 2) (`actual`) not equal to dplyr::tibble(...) (`expected`).
    
      `attr(actual, 'row.names')`:        
    `attr(expected, 'row.names')`: 1 2 3 4
    
      `actual$subject_id`:        
    `expected$subject_id`: 1 2 3 3
    
     actual$cohort_start_date | expected$cohort_start_date    
                              - "2000-12-11"               [1]
                              - "2002-09-08"               [2]
                              - "2015-02-19"               [3]
                              - "2015-02-20"               [4]
    
    `actual$cohort_end_date`:                                                      
    `expected$cohort_end_date`: "2000-12-11" "2002-09-08" "2015-02-19" "2015-02-20"
    ── Failure ('test-requireCohortIntersect.R:72:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:73:3'): requiring presence in another cohort ──
    all(dplyr::pull(cdm$cohort5, "subject_id") == c("3", "3")) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:74:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:89:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:92:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:93:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:107:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:110:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireCohortIntersect.R:111:3'): requiring presence in another cohort ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireConceptIntersect.R:38:3'): require flag in concept ────
    all(dplyr::pull(cdm$cohort3, "subject_id") == rep(1, 5)) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireConceptIntersect.R:40:3'): require flag in concept ────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireConceptIntersect.R:54:3'): require flag in concept ────
    all(dplyr::pull(cdm$cohort4, "subject_id") == c(rep(1, 5), 3)) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireConceptIntersect.R:56:3'): require flag in concept ────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireConceptIntersect.R:68:3'): require flag in concept ────
    length(dplyr::pull(cdm$cohort5, "subject_id")) == 0 is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireIsFirstEntry.R:8:3'): test restrict to first entry works ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireIsFirstEntry.R:14:3'): test restrict to first entry works ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-requireIsFirstEntry.R:18:3'): test restrict to first entry works ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-sampleCohorts.R:41:3'): sampleCohort subsetting multiple cohorts ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-sampleCohorts.R:53:3'): sampleCohort subsetting multiple cohorts ──
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:9:3'): unionCohorts works ─────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:13:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:17:3'): unionCohorts works ────────────────────
    all(cdm$cohort2 %>% dplyr::pull("subject_id") %>% sort() == 1:4) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:20:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:34:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:38:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:42:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Failure ('test-unionCohorts.R:45:3'): unionCohorts works ────────────────────
    all(...) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Error ('test-unionCohorts.R:84:3'): gap and name works ──────────────────────
    Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: ! 3 observations outside observation period.
    Backtrace:
        ▆
     1. └─omopgenerics::newCohortTable(cdm$cohort1) at test-unionCohorts.R:84:3
     2.   └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation)
     3.     └─omopgenerics::validateCohortArgument(...)
     4.       └─omopgenerics:::checkObservationPeriod(...)
     5.         └─cli::cli_abort(message = mes, call = call)
     6.           └─rlang::abort(...)
    
    [ FAIL 41 | WARN 152 | SKIP 51 | PASS 192 ]
    Error: Test failures
    Execution halted

Package: CohortSymmetry
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘a01_Introduction.Rmd’ using rmarkdown
  
  Quitting from lines 101-105 [unnamed-chunk-6] (a01_Introduction.Rmd)
  Error: processing vignette 'a01_Introduction.Rmd' failed with diagnostics:
  Aborted! All the temporal symmetry results are NAs, no plots could be
  produced
  --- failed re-building ‘a01_Introduction.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  --- re-building ‘a02_Generate_a_sequence_cohort_set.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  --- finished re-building ‘a02_Generate_a_sequence_cohort_set.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  --- re-building ‘a03_Summarise_sequence_ratios.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  --- finished re-building ‘a03_Summarise_sequence_ratios.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  --- re-building ‘a04_Visualise_sequence_ratios.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios_files/figure-html/unnamed-chunk-12-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 13436 bytes
  Input file size = 13526 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12010
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 12010
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 12010
  
  Output IDAT size = 12010 bytes (1426 bytes decrease)
  Output file size = 12088 bytes (1438 bytes = 10.63% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios_files/figure-html/unnamed-chunk-13-1.png
  672x480 pixels, 8 bits/pixel, 253 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 6163 bytes
  Input file size = 7012 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5141
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5141
  
  Output IDAT size = 5141 bytes (1022 bytes decrease)
  Output file size = 5219 bytes (1793 bytes = 25.57% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios_files/figure-html/unnamed-chunk-14-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 12072 bytes
  Input file size = 12162 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10916
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10614
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10614
  
  Output IDAT size = 10614 bytes (1458 bytes decrease)
  Output file size = 10692 bytes (1470 bytes = 12.09% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios_files/figure-html/unnamed-chunk-15-1.png
  672x480 pixels, 8 bits/pixel, 255 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 7578 bytes
  Input file size = 8433 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6475
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6475
  
  Output IDAT size = 6475 bytes (1103 bytes decrease)
  Output file size = 6553 bytes (1880 bytes = 22.29% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios_files/figure-html/unnamed-chunk-16-1.png
  672x480 pixels, 8 bits/pixel, 256 colors in palette
  Reducing image to 8 bits/pixel, grayscale
  Input IDAT size = 7901 bytes
  Input file size = 8759 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6812
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6812
  
  Output IDAT size = 6812 bytes (1089 bytes decrease)
  Output file size = 6890 bytes (1869 bytes = 21.34% decrease)
  
  --- finished re-building ‘a04_Visualise_sequence_ratios.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  --- re-building ‘a05_Summarise_temporal_symmetry.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  --- finished re-building ‘a05_Summarise_temporal_symmetry.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  --- re-building ‘a06_Visualise_temporal_symmetry.Rmd’ using rmarkdown
  trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
  Content type 'application/zip' length 6754786 bytes (6.4 MB)
  ==================================================
  downloaded 6.4 MB
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a06_Visualise_temporal_symmetry_files/figure-html/unnamed-chunk-5-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 19618 bytes
  Input file size = 19720 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16567
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16567
  
  Output IDAT size = 16567 bytes (3051 bytes decrease)
  Output file size = 16645 bytes (3075 bytes = 15.59% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a06_Visualise_temporal_symmetry_files/figure-html/unnamed-chunk-6-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 17122 bytes
  Input file size = 17224 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14774
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14774
  
  Output IDAT size = 14774 bytes (2348 bytes decrease)
  Output file size = 14852 bytes (2372 bytes = 13.77% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a06_Visualise_temporal_symmetry_files/figure-html/unnamed-chunk-7-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 21815 bytes
  Input file size = 21917 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18148
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18148
  
  Output IDAT size = 18148 bytes (3667 bytes decrease)
  Output file size = 18226 bytes (3691 bytes = 16.84% decrease)
  
  ** Processing: /home/hornik/tmp/CRAN_recheck/CohortSymmetry.Rcheck/vign_test/CohortSymmetry/vignettes/a06_Visualise_temporal_symmetry_files/figure-html/unnamed-chunk-8-1.png
  672x480 pixels, 3x8 bits/pixel, RGB
  Input IDAT size = 19546 bytes
  Input file size = 19648 bytes
  
  Trying:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16547
    zc = 9  zm = 8  zs = 1  f = 0
    zc = 1  zm = 8  zs = 2  f = 0
    zc = 9  zm = 8  zs = 3  f = 0
    zc = 9  zm = 8  zs = 0  f = 5
    zc = 9  zm = 8  zs = 1  f = 5
    zc = 1  zm = 8  zs = 2  f = 5
    zc = 9  zm = 8  zs = 3  f = 5
                                 
  Selecting parameters:
    zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16547
  
  Output IDAT size = 16547 bytes (2999 bytes decrease)
  Output file size = 16625 bytes (3023 bytes = 15.39% decrease)
  
  --- finished re-building ‘a06_Visualise_temporal_symmetry.Rmd’
  
  Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
  SUMMARY: processing the following file failed:
    ‘a01_Introduction.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted