test_that("test getCohortName and getCohortId", { person <- dplyr::tibble( person_id = 1, gender_concept_id = 0, year_of_birth = 1990, race_concept_id = 0, ethnicity_concept_id = 0 ) observation_period <- dplyr::tibble( observation_period_id = 1, person_id = 1, observation_period_start_date = as.Date("2000-01-01"), observation_period_end_date = as.Date("2025-12-31"), period_type_concept_id = 0 ) x <- dplyr::tibble( cohort_definition_id = 1L, subject_id = 1L, cohort_start_date = Sys.Date(), cohort_end_date = Sys.Date() ) attr(x, "cohort_set") <- dplyr::tibble( cohort_definition_id = c(1, 2, 3, 4), cohort_name = c("condition1", "drug1", "covid", "asthma") ) y <- dplyr::tibble( cohort_definition_id = 1:5, subject_id = 1L, cohort_start_date = Sys.Date(), cohort_end_date = Sys.Date() ) cdm <- cdmFromTables( tables = list("person" = person, "observation_period" = observation_period), cohortTables = list("my_first_cohort" = x, "my_second_cohort" = y), cdmName = "test" ) expect_identical( getCohortId(cdm$my_first_cohort), c("condition1" = 1, "drug1" = 2, "covid" = 3, "asthma" = 4) ) expect_identical( getCohortId(cdm$my_first_cohort, "drug1"), c("drug1" = 2) ) expect_identical( getCohortId(cdm$my_first_cohort, c("asthma", "covid")), c(asthma = 4, covid = 3) ) expect_identical( getCohortId(cdm$my_first_cohort, c("covid", "asthma")), c(covid = 3, asthma = 4) ) expect_warning(expect_identical( getCohortId(cdm$my_first_cohort, c("covid", "random", "asthma")), c(covid = 3, asthma = 4) )) expect_warning(getCohortId(cdm$my_first_cohort, "random")) expect_identical( getCohortName(cdm$my_first_cohort), c("1" = "condition1", "2" = "drug1", "3" = "covid", "4" = "asthma") ) expect_identical( getCohortName(cdm$my_second_cohort, 1), c("1" = "cohort_1") ) expect_identical( getCohortName(cdm$my_second_cohort, 1L), c("1" = "cohort_1") ) expect_identical( getCohortName(cdm$my_second_cohort, c(4, 2)), c("4" = "cohort_4", "2" = "cohort_2") ) expect_warning(expect_identical( getCohortName(cdm$my_second_cohort, c(6:1)), c("5" = "cohort_5", "4" = "cohort_4", "3" = "cohort_3", "2" = "cohort_2", "1" = "cohort_1") )) expect_warning(getCohortName(cdm$my_second_cohort, 8)) expect_error(getCohortName(cdm$my_second_cohort, "1")) })