* using log directory ‘/srv/hornik/tmp/CRAN/ohun.Rcheck’ * using R Under development (unstable) (2023-11-08 r85495) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (16) GNU Fortran (Debian 13.2.0-5) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ohun/DESCRIPTION’ ... OK * this is package ‘ohun’ version ‘1.0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] Note_to_CRAN_maintainers Maintainer: ‘Marcelo Araya-Salas ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘ohun’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/10s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) energy_detector.Rd:29: Lost braces 29 | frequency bandpass filter (in kHz). Default is \code{NULL}. This argument is used internally by \code{\link{get_envelopes}}. Not used if 'envelopes' are supplied. Bandpass is done using the function code{\link[seewave]{ffilter}}, which applies a short-term Fourier transformation to first create a spectrogram in which the target frequencies are filtered and then is back transform into a wave object using a reverse Fourier transformation.} | ^ checkRd: (-1) energy_detector.Rd:32: Lost braces 32 | with a sum smooth function. It controls the time 'neighborhood' (in ms) in which amplitude samples are smoothed (i.e. averaged with neighboring samples). Default is 5. 0 means no smoothing is applied. Note that smoothing is applied before thinning (see 'thinning' argument). The function \code{\link[warbleR]{envelope}} is used internally which is analogous to sum smoothing in code{\link[seewave]{env}}. This argument is used internally by \code{\link{get_envelopes}}. Not used if 'envelopes' are supplied.} | ^ checkRd: (-1) get_envelopes.Rd:17: Lost braces 17 | frequency bandpass filter (in kHz). Default is \code{NULL}. Bandpass is done using the function code{\link[seewave]{ffilter}}, which applies a short-term Fourier transformation to first create a spectrogram in which the target frequencies are filtered and then is back transform into a wave object using a reverse Fourier transformation.} | ^ checkRd: (-1) get_envelopes.Rd:34: Lost braces 34 | with a sum smooth function. It controls the time 'neighborhood' (in ms) in which amplitude samples are smoothed (i.e. averaged with neighboring samples). Default is 5. 0 means no smoothing is applied. Note that smoothing is applied before thinning (see 'thinning' argument). The function \code{\link[warbleR]{envelope}} is used internally which is analogous to sum smoothing in code{\link[seewave]{env}}. This argument is used internally by \code{\link{get_envelopes}}.} | ^ checkRd: (-1) optimize_energy_detector.Rd:30: Lost braces 30 | with a sum smooth function. It controls the time 'neighborhood' (in ms) in which amplitude samples are smoothed (i.e. averaged with neighboring samples). Default is 5. 0 means no smoothing is applied. Note that smoothing is applied before thinning (see 'thinning' argument). The function \code{\link[warbleR]{envelope}} is used internally which is analogous to sum smoothing in code{\link[seewave]{env}}. This argument is used internally by \code{\link{get_envelopes}}. \strong{Several values can be supplied for optimization}.} | ^ checkRd: (-1) optimize_energy_detector.Rd:55: Lost braces 55 | frequency bandpass filter (in kHz). Default is \code{NULL}. This argument is used internally by \code{\link{get_envelopes}}. Not used if 'envelopes' are supplied. Bandpass is done using the function code{\link[seewave]{ffilter}}, which applies a short-term Fourier transformation to first create a spectrogram in which the target frequencies are filtered and then is back transform into a wave object using a reverse Fourier transformation.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [12s/12s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [49s/49s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE