R Under development (unstable) (2024-10-01 r87205 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(oglcnac) > > test_check("oglcnac") Row 1: entry_name updated from NA to BSN_MOUSE Row 1: protein_name updated from NA to Protein bassoon Row 1: gene_name updated from NA to Bsn Row 2: entry_name updated from NA to GORS2_RAT Row 2: protein_name updated from NA to Golgi reassembly-stacking protein 2 Row 2: gene_name updated from NA to Gorasp2 Comparison completed. Row 1: No changes detected. Row 2: No changes detected. Comparison completed. i Parsing UniProt data... v Entry name retrieved: BSN_MOUSE v Protein name retrieved: Protein bassoon v Gene name retrieved: Bsn i Parsing completed. i Parsing UniProt data... v Entry name retrieved: BSN_MOUSE v Protein name retrieved: Protein bassoon ! Gene name not available i Parsing completed. Skipping non-UniProt row 1 Processing accession: O35927 i Sending request to UniProt for accession: O35927 v Successfully retrieved data for O35927 i Parsing UniProt data... v Entry name retrieved: CTND2_MOUSE v Protein name retrieved: Catenin delta-2 v Gene name retrieved: Ctnnd2 i Parsing completed. Data updated for row 2 Processing accession: Q9R064 i Sending request to UniProt for accession: Q9R064 v Successfully retrieved data for Q9R064 i Parsing UniProt data... v Entry name retrieved: GORS2_RAT v Protein name retrieved: Golgi reassembly-stacking protein 2 v Gene name retrieved: Gorasp2 i Parsing completed. Data updated for row 3 Processing accession: P51611 i Sending request to UniProt for accession: P51611 v Successfully retrieved data for P51611 i Parsing UniProt data... v Entry name retrieved: HCFC1_MESAU v Protein name retrieved: Host cell factor 1 v Gene name retrieved: HCFC1 i Parsing completed. Data updated for row 4 Processing accession: Q62784 i Sending request to UniProt for accession: Q62784 v Successfully retrieved data for Q62784 i Parsing UniProt data... v Entry name retrieved: INP4A_RAT v Protein name retrieved: Inositol polyphosphate-4-phosphatase type I A v Gene name retrieved: Inpp4a i Parsing completed. Data updated for row 5 Processing accession: P46660 i Sending request to UniProt for accession: P46660 v Successfully retrieved data for P46660 i Parsing UniProt data... v Entry name retrieved: AINX_MOUSE v Protein name retrieved: Alpha-internexin v Gene name retrieved: Ina i Parsing completed. Data updated for row 6 Processing accession: P59759 i Sending request to UniProt for accession: P59759 v Successfully retrieved data for P59759 i Parsing UniProt data... v Entry name retrieved: MRTFB_MOUSE v Protein name retrieved: Myocardin-related transcription factor B v Gene name retrieved: Mrtfb i Parsing completed. Data updated for row 7 Processing accession: P08551 i Sending request to UniProt for accession: P08551 v Successfully retrieved data for P08551 i Parsing UniProt data... v Entry name retrieved: NFL_MOUSE v Protein name retrieved: Neurofilament light polypeptide v Gene name retrieved: Nefl i Parsing completed. Data updated for row 8 Processing accession: P19527 i Sending request to UniProt for accession: P19527 v Successfully retrieved data for P19527 i Parsing UniProt data... v Entry name retrieved: NFL_RAT v Protein name retrieved: Neurofilament light polypeptide v Gene name retrieved: Nefl i Parsing completed. Data updated for row 9 Processing accession: P08553 i Sending request to UniProt for accession: P08553 v Successfully retrieved data for P08553 i Parsing UniProt data... v Entry name retrieved: NFM_MOUSE v Protein name retrieved: Neurofilament medium polypeptide v Gene name retrieved: Nefm i Parsing completed. Data updated for row 10 Processing accession: Q4KLH5 i Sending request to UniProt for accession: Q4KLH5 v Successfully retrieved data for Q4KLH5 i Parsing UniProt data... v Entry name retrieved: AGFG1_RAT v Protein name retrieved: Arf-GAP domain and FG repeat-containing protein 1 v Gene name retrieved: Agfg1 i Parsing completed. Data updated for row 11 Processing accession: Q9QYX7 i Sending request to UniProt for accession: Q9QYX7 v Successfully retrieved data for Q9QYX7 i Parsing UniProt data... v Entry name retrieved: PCLO_MOUSE v Protein name retrieved: Protein piccolo v Gene name retrieved: Pclo i Parsing completed. Data updated for row 12 Processing accession: Q62417 i Sending request to UniProt for accession: Q62417 v Successfully retrieved data for Q62417 i Parsing UniProt data... v Entry name retrieved: SRBS1_MOUSE v Protein name retrieved: Sorbin and SH3 domain-containing protein 1 v Gene name retrieved: Sorbs1 i Parsing completed. Data updated for row 13 Processing accession: P11831 i Sending request to UniProt for accession: P11831 v Successfully retrieved data for P11831 i Parsing UniProt data... v Entry name retrieved: SRF_HUMAN v Protein name retrieved: Serum response factor v Gene name retrieved: SRF i Parsing completed. Data updated for row 14 Processing accession: O88737 i Sending request to UniProt for accession: O88737 v Successfully retrieved data for O88737 i Parsing UniProt data... v Entry name retrieved: BSN_MOUSE v Protein name retrieved: Protein bassoon v Gene name retrieved: Bsn i Parsing completed. Data updated for row 15 Processing accession: P05696 i Sending request to UniProt for accession: P05696 v Successfully retrieved data for P05696 i Parsing UniProt data... v Entry name retrieved: KPCA_RAT v Protein name retrieved: Protein kinase C alpha type v Gene name retrieved: Prkca i Parsing completed. Data updated for row 16 Processing accession: P68403 i Sending request to UniProt for accession: P68403 v Successfully retrieved data for P68403 i Parsing UniProt data... v Entry name retrieved: KPCB_RAT v Protein name retrieved: Protein kinase C beta type v Gene name retrieved: Prkcb i Parsing completed. Data updated for row 17 Processing accession: P63319 i Sending request to UniProt for accession: P63319 v Successfully retrieved data for P63319 i Parsing UniProt data... v Entry name retrieved: KPCG_RAT v Protein name retrieved: Protein kinase C gamma type v Gene name retrieved: Prkcg i Parsing completed. Data updated for row 18 Processing accession: P09215 i Sending request to UniProt for accession: P09215 v Successfully retrieved data for P09215 i Parsing UniProt data... v Entry name retrieved: KPCD_RAT v Protein name retrieved: Protein kinase C delta type v Gene name retrieved: Prkcd i Parsing completed. Data updated for row 19 Processing accession: Q6DUV1 i Sending request to UniProt for accession: Q6DUV1 v Successfully retrieved data for Q6DUV1 i Parsing UniProt data... v Entry name retrieved: Q6DUV1_RAT v Protein name retrieved: Protein kinase C epsilon type v Gene name retrieved: Prkce i Parsing completed. Data updated for row 20 v Processing completed for all rows. i Sending request to UniProt for accession: INVALID_ACCESSION x Failed to retrieve data for INVALID_ACCESSION. HTTP status: 400 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ] > > proc.time() user system elapsed 3.26 0.39 4.56