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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(normfluodbf) == Welcome to normfluodbf - Developed by Tingwei Adeck and Tesla Adeck (Jesus Followers) =========================================================================== If you find this package useful, please leave a star: https://github.com/AlphaPrime7/normfluodbf If you want to support me in my learning and development journey: https://www.buymeacoffee.com/tingweiadeck If you encounter a bug or want to request an enhancement please file an issue at: https://github.com/AlphaPrime7/normfluodbf/issues Thank you for using normfluodbf! Attaching package: 'normfluodbf' The following object is masked from 'package:stats': step The following object is masked from 'package:base': subset > > test_check("normfluodbf") Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) 27 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (1 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (1 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (1 seconds) [1] "Steps left:4" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (1 seconds) [1] "Steps left:4" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (1 seconds) [1] "Steps left:5" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: remove_outliers" [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete [ FAIL 2 | WARN 365 | SKIP 0 | PASS 23 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_plot.R:22:3'): test normfluodbf filled wells plot ──────────── plate[["fluostar_plot"]] has type 'object', not 'list'. ── Failure ('test_plot.R:23:3'): test normfluodbf filled wells plot ──────────── as.list(plt.obj) has length 12, not length 11. [ FAIL 2 | WARN 365 | SKIP 0 | PASS 23 ] Error: Test failures Execution halted