* using log directory ‘/srv/hornik/tmp/CRAN_pretest/normfluodbf.Rcheck’ * using R Under development (unstable) (2025-09-12 r88822) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘normfluodbf/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘normfluodbf’ version ‘2.0.2’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] NOTE Maintainer: ‘Tingwei Adeck ’ Found the following (possibly) invalid URLs: URL: https://github.com/AlphaPrime7/normfluodbf_builds From: README.md Status: 404 Message: Not Found URL: https://www.sigmaaldrich.com/US/en/technical-documents/protocol/research-and-disease-areas/cell-signaling/ion-channel-flux-assays-and-protocols From: inst/doc/normfluodbf.html Status: Error Message: Stream error in the HTTP/2 framing layer [www.sigmaaldrich.com]: HTTP/2 stream 3 was not closed cleanly: INTERNAL_ERROR (err 2) Size of tarball: 9070858 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘normfluodbf’ can be installed ... [8s/8s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/16s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [6s/6s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [10s/10s] ERROR Running ‘testthat.R’ [10s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(normfluodbf) == Welcome to normfluodbf - Developed by Tingwei Adeck and Tesla Adeck (Jesus Followers) =========================================================================== If you find this package useful, please leave a star: https://github.com/AlphaPrime7/normfluodbf If you want to support me in my learning and development journey: https://www.buymeacoffee.com/tingweiadeck If you encounter a bug or want to request an enhancement please file an issue at: https://github.com/AlphaPrime7/normfluodbf/issues Thank you for using normfluodbf! Attaching package: 'normfluodbf' The following object is masked from 'package:stats': step The following object is masked from 'package:base': subset > > test_check("normfluodbf") Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) 27 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) C9 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 Crikee, some values in your original data violate thresholds 🐷 🐫 Outlier wells (Mixtures might be problematic and should be investigated with mixtools) A01, A02, A03, B01, B02, B03, C01, C02, C03 The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) [1] "Steps left:4" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) [1] "Steps left:4" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete The upload_data step needs to be completed Initializing Data ... Data Initialized step DONE... DONE (0 seconds) [1] "Steps left:5" [1] "Next step function: format_plate_data" Formating Plate Data ... Data Formatted step DONE... DONE (0 seconds) [1] "Next step function: remove_outliers" [1] "Next step function: normalize_by_well" Normalizing Data ... Data Normalized step DONE... DONE (0 seconds) [1] "Next step function: modify_plate_data" [1] "Next step function: analyze_ready" Process complete [ FAIL 2 | WARN 365 | SKIP 0 | PASS 23 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_plot.R:22:3'): test normfluodbf filled wells plot ──────────── plate[["fluostar_plot"]] has type 'object', not 'list'. ── Failure ('test_plot.R:23:3'): test normfluodbf filled wells plot ──────────── as.list(plt.obj) has length 12, not length 11. [ FAIL 2 | WARN 365 | SKIP 0 | PASS 23 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE