* installing *source* package ‘nonmem2rx’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (11)’ using C++ compiler: ‘Debian clang version 18.1.8 (11)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c abbrec.c -o abbrec.o In file included from abbrec.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c abbrev.c -o abbrev.o In file included from abbrev.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c data.c -o data.o In file included from data.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o init.c:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c input.c -o input.o In file included from input.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c lst.c -o lst.o In file included from lst.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c mem.c -o mem.o In file included from mem.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c model.c -o model.o In file included from model.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c nonmemId.cpp -o nonmemId.o nonmemId.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c omega.c -o omega.o In file included from omega.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c records.c -o records.o In file included from records.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c sbuf.c -o sbuf.o sbuf.c:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c strncmpi.c -o strncmpi.o strncmpi.c:31:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 31 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c sub.c -o sub.o In file included from sub.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c tab.c -o tab.o In file included from tab.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c theta.c -o theta.o In file included from theta.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c util.cpp -o util.o util.cpp:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o In file included from validate.c:7: In file included from /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parseSbuf.h:28: /srv/hornik/tmp/CRAN_pretest/Library/rxode2/include/rxode2parse.h:2:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 2 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o nonmem2rx.so RcppExports.o abbrec.o abbrev.o data.o init.o input.o lst.o mem.o model.o nonmemId.o omega.o records.o sbuf.o strncmpi.o sub.o tab.o theta.o util.o validate.o -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/nonmem2rx.Rcheck/00LOCK-nonmem2rx/00new/nonmem2rx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nonmem2rx)