* installing *source* package 'nonanR' ... ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ApproximateEntropyTest.cpp -o ApproximateEntropyTest.o ApproximateEntropyTest.cpp: In function 'double ApproximateEntropyTest(arma::colvec, int, double)': ApproximateEntropyTest.cpp:21:9: warning: unused variable 'inval' [-Wunused-variable] 21 | int inval = 1/val; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Ent_Ap.cpp -o Ent_Ap.o Ent_Ap.cpp: In function 'double Ent_Ap(arma::colvec, int, double)': Ent_Ap.cpp:55:9: warning: unused variable 'inval' [-Wunused-variable] 55 | int inval = 1.0/val; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Ent_Samp.cpp -o Ent_Samp.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Ent_Sym.cpp -o Ent_Sym.o Ent_Sym.cpp: In function 'double Ent_Sym(arma::vec, double, unsigned int)': Ent_Sym.cpp:50:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 50 | for (unsigned int i = 0; i < numSeqs; i++){ | ~~^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ami.cpp -o ami.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesH.cpp -o bayesH.o bayesH.cpp: In function 'double fmin(double*, double, double, int)': bayesH.cpp:97:10: warning: unused variable 'tol1' [-Wunused-variable] 97 | double tol1 = eps + 1; | ^~~~ bayesH.cpp: In function 'arma::vec ltza(arma::vec, double*, unsigned int)': bayesH.cpp:254:7: warning: variable 'fault' set but not used [-Wunused-but-set-variable] 254 | int fault = 1; | ^~~~~ In function 'double* cVector(long int)', inlined from 'arma::vec ltza(arma::vec, double*, unsigned int)' at bayesH.cpp:268:15: bayesH.cpp:421:25: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 421 | vector=(VECTOR) calloc(n, n*sizeof(double)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ bayesH.cpp:421:25: warning: argument 2 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/std_abs.h:38, from D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/cmath:49, from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/platform/compiler.h:100, from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/Rcpp/r/headers.h:62, from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/RcppCommon.h:30, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29, from bayesH.cpp:1: D:/rtools44/x86_64-w64-mingw32.static.posix/include/stdlib.h: In function 'arma::vec ltza(arma::vec, double*, unsigned int)': D:/rtools44/x86_64-w64-mingw32.static.posix/include/stdlib.h:536:17: note: in a call to allocation function 'void* calloc(size_t, size_t)' declared here 536 | void *__cdecl calloc(size_t _NumOfElements,size_t _SizeOfElements); | ^~~~~~ In function 'double* cVector(long int)', inlined from 'arma::vec ltza(arma::vec, double*, unsigned int)' at bayesH.cpp:269:15: bayesH.cpp:421:25: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 421 | vector=(VECTOR) calloc(n, n*sizeof(double)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ bayesH.cpp:421:25: warning: argument 2 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] D:/rtools44/x86_64-w64-mingw32.static.posix/include/stdlib.h: In function 'arma::vec ltza(arma::vec, double*, unsigned int)': D:/rtools44/x86_64-w64-mingw32.static.posix/include/stdlib.h:536:17: note: in a call to allocation function 'void* calloc(size_t, size_t)' declared here 536 | void *__cdecl calloc(size_t _NumOfElements,size_t _SizeOfElements); | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cppsr.cpp -o cppsr.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dfa.cpp -o dfa.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fgn_sim.cpp -o fgn_sim.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lmc.cpp -o lmc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lye_rosenstein.cpp -o lye_rosenstein.o lye_rosenstein.cpp: In function 'Rcpp::List lye_rosenstein(const arma::mat&, double, double, int, const arma::uvec&)': lye_rosenstein.cpp:81:8: warning: unused variable 'success' [-Wunused-variable] 81 | bool success = arma::solve(lye, arma::join_rows(arma::ones(x.n_elem), x), y); | ^~~~~~~ lye_rosenstein.cpp: In function 'arma::vec mean_log_distance(const arma::uvec&, const arma::uvec&, const arma::mat&)': lye_rosenstein.cpp:121:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 121 | for (int j = 0; j < X.n_rows - st; ++j) { | ~~^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c meanfreq.cpp -o meanfreq.o meanfreq.cpp: In function 'double meanfreq(const arma::vec&, double)': meanfreq.cpp:40:10: warning: unused variable 'mean_frequency' [-Wunused-variable] 40 | double mean_frequency = weighted_sum / total_power; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mfdfa.cpp -o mfdfa.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c poly_residuals.cpp -o poly_residuals.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rqa.cpp -o rqa.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c seq_int.cpp -o seq_int.o g++ -std=gnu++17 -shared -s -static-libgcc -o nonanR.dll tmp.def ApproximateEntropyTest.o Ent_Ap.o Ent_Samp.o Ent_Sym.o RcppExports.o ami.o bayesH.o cppsr.o dfa.o fgn_sim.o lmc.o lye_rosenstein.o meanfreq.o mfdfa.o poly_residuals.o rqa.o seq_int.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-nonanR/00new/nonanR/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nonanR)