* using log directory ‘/srv/hornik/tmp/CRAN_pretest/nlmixr2plot.Rcheck’ * using R Under development (unstable) (2025-06-22 r88341) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK * this is package ‘nlmixr2plot’ version ‘3.0.2’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/7s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘nlmixr2plot’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [43s/44s] ERROR Running ‘testthat.R’ [43s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(nlmixr2plot) > > test_check("nlmixr2plot") > loading into symengine environment... > pruning branches (`if`/`else`) of saem model... v done > finding duplicate expressions in saem model... [====|====|====|====|====|====|====|====|====|====] 0:00:00 v done using C compiler: ‘Debian clang version 19.1.7 (3+b1)’ i calculate uninformed etas i done rxode2 3.0.4 using 1 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` ======================================== rxode2 has not detected OpenMP support and will run in single-threaded mode The system is Linux; To get best performance enable OpenMP ======================================== Calculating covariance matrix [====|====|====|====|====|====|====|====|====|====] 0:00:00 > loading into symengine environment... > pruning branches (`if`/`else`) of saem model... v done > finding duplicate expressions in saem predOnly model 0... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in saem predOnly model 1... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > finding duplicate expressions in saem predOnly model 2... [====|====|====|====|====|====|====|====|====|====] 0:00:00 > optimizing duplicate expressions in saem predOnly model 2... [====|====|====|====|====|====|====|====|====|====] 0:00:00 v done using C compiler: ‘Debian clang version 19.1.7 (3+b1)’ > Calculating residuals/tables v done > compress origData in nlmixr2 object, save 14912 > compress phiM in nlmixr2 object, save 1080 > compress parHistData in nlmixr2 object, save 2096 > compress saem0 in nlmixr2 object, save 31128 using C compiler: ‘Debian clang version 19.1.7 (3+b1)’ using C compiler: ‘Debian clang version 19.1.7 (3+b1)’ Prediction-correction cannot be used together with censored data (ULOQ). VPC plot will be shown for non-censored data only! Prediction-correction cannot be used together with censored data (ULOQ). VPC plot will be shown for non-censored data only! Prediction-correction cannot be used together with censored data (ULOQ). VPC plot will be shown for non-censored data only! Prediction-correction cannot be used together with censored data (ULOQ). VPC plot will be shown for non-censored data only! using C compiler: ‘Debian clang version 19.1.7 (3+b1)’ [ FAIL 1 | WARN 3 | SKIP 2 | PASS 30 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-add.R:41:3'): test addition operator ─────────────────────────── Error in `as.environment(where)`: no item called "add_gg" on the search list Backtrace: ▆ 1. └─nlmixr2plot:::`+.nlmixr2PlotList`(pl, ggplot2::xlab("cool")) at test-add.R:41:3 2. ├─stats::setNames(...) 3. └─base::lapply(...) 4. └─nlmixr2plot (local) FUN(X[[i]], ...) 5. └─nlmixr2plot:::.add_gg(x[[i]], y) 6. └─base::exists(.ns, "add_gg") [ FAIL 1 | WARN 3 | SKIP 2 | PASS 30 ] Error: Test failures Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR