* installing *source* package ‘nlmixr2est’ ... ** using staged installation --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- ARMA=@ARMA@ BH=@BH@ RCPP=@RCPP@ RXP=@RXP@ CXX_STD = CXX17 PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"$(BH)" -I"$(RCPP)" -I"$(ARMA)" -I"$(RXP)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1 SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS) SHLIB_LD = $(SHLIB_CXXLD) SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c SOURCES_CPP = uninformativeEtas.cpp nlm.cpp filterNormalLike.cpp inner.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o) all: $(SHLIB) $(SHLIB): $(OBJECTS) --------[end src/Makevars]-------- ** libs using C compiler: ‘Debian clang version 19.1.3 (2)’ using C++ compiler: ‘Debian clang version 19.1.3 (2)’ using C++17 clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c uninformativeEtas.cpp -o uninformativeEtas.o In file included from uninformativeEtas.cpp:2: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from uninformativeEtas.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from uninformativeEtas.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from uninformativeEtas.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from uninformativeEtas.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c nlm.cpp -o nlm.o In file included from nlm.cpp:4: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from nlm.cpp:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from nlm.cpp:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from nlm.cpp:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from nlm.cpp:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ nlm.cpp:399:7: warning: unused variable 'cores' [-Wunused-variable] 399 | int cores = getOpCores(op); | ^~~~~ nlm.cpp:525:7: warning: unused variable 'cores' [-Wunused-variable] 525 | int cores = getOpCores(op); | ^~~~~ nlm.cpp:608:12: warning: unused variable 'llik' [-Wunused-variable] 608 | double llik; | ^~~~ 9 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c filterNormalLike.cpp -o filterNormalLike.o In file included from filterNormalLike.cpp:10: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from filterNormalLike.cpp:10: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from filterNormalLike.cpp:10: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from filterNormalLike.cpp:10: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from filterNormalLike.cpp:10: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c inner.cpp -o inner.o In file included from inner.cpp:5: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from inner.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from inner.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from inner.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from inner.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ inner.cpp:3153:26: warning: variable 'k' set but not used [-Wunused-but-set-variable] 3153 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0; | ^ inner.cpp:3153:59: warning: variable 'iH' set but not used [-Wunused-but-set-variable] 3153 | unsigned int i, j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0, iLO=0; | ^ 8 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c shi21.cpp -o shi21.o In file included from shi21.cpp:11: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from shi21.cpp:11: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from shi21.cpp:11: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from shi21.cpp:11: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from shi21.cpp:11: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c nearPD.cpp -o nearPD.o In file included from nearPD.cpp:5: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from nearPD.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from nearPD.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from nearPD.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from nearPD.cpp:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c censEst.cpp -o censEst.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c saem.cpp -o saem.o In file included from saem.cpp:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from saem.cpp:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from saem.cpp:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from saem.cpp:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c expandNlme.cpp -o expandNlme.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c npde.cpp -o npde.o In file included from npde.cpp:2: In file included from ./npde.h:13: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from npde.cpp:2: In file included from ./npde.h:13: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from npde.cpp:2: In file included from ./npde.h:13: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from npde.cpp:2: In file included from ./npde.h:13: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from npde.cpp:2: In file included from ./npde.h:13: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ npde.cpp:129:15: warning: variable 'hi' set but not used [-Wunused-but-set-variable] 129 | double low, hi, low2, hi2; | ^ 7 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c shrink.cpp -o shrink.o In file included from shrink.cpp:2: In file included from ./shrink.h:5: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from shrink.cpp:2: In file included from ./shrink.h:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from shrink.cpp:2: In file included from ./shrink.h:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from shrink.cpp:2: In file included from ./shrink.h:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from shrink.cpp:2: In file included from ./shrink.h:5: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ires.cpp -o ires.o In file included from ires.cpp:2: In file included from ./ires.h:4: In file included from ./res.h:4: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from ires.cpp:2: In file included from ./ires.h:4: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from ires.cpp:2: In file included from ./ires.h:4: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from ires.cpp:2: In file included from ./ires.h:4: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from ires.cpp:2: In file included from ./ires.h:4: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c res.cpp -o res.o In file included from res.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from res.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from res.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from res.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from res.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ res.cpp:17:7: warning: unused variable 'idSize' [-Wunused-variable] 17 | int idSize = ID.size(); | ^~~~~~ 7 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c cwres.cpp -o cwres.o In file included from cwres.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from cwres.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from cwres.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from cwres.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from cwres.cpp:2: In file included from ./res.h:4: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c censResid.cpp -o censResid.o In file included from censResid.cpp:2: In file included from ./censResid.h:3: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from censResid.cpp:2: In file included from ./censResid.h:3: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from censResid.cpp:2: In file included from ./censResid.h:3: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from censResid.cpp:2: In file included from ./censResid.h:3: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from censResid.cpp:2: In file included from ./censResid.h:3: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c cholse.cpp -o cholse.o In file included from cholse.cpp:2: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from cholse.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from cholse.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from cholse.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from cholse.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c neldermead.cpp -o neldermead.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c resid.cpp -o resid.o In file included from resid.cpp:2: In file included from ./armahead.h:12: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined] 31 | #define ARMA_DONT_USE_OPENMP 1 | ^ ./armahead.h:4:9: note: previous definition is here 4 | #define ARMA_DONT_USE_OPENMP // Known to cause speed problems | ^ In file included from resid.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from resid.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from resid.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from resid.cpp:2: In file included from ./armahead.h:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:45: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2_RcppExports.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 6 warnings generated. clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c slice.cpp -o slice.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExportMod.cpp -o RcppExportMod.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"@BH@" -I"@RCPP@" -I"@ARMA@" -I"@RXP@" -DARMA_64BIT_WORD=1 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/nlmixr2est.h:7: In file included from ./../inst/include/nlmixr2est_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/nlmixr2est.h:7: In file included from ./../inst/include/nlmixr2est_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/nlmixr2est.h:7: In file included from ./../inst/include/nlmixr2est_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/nlmixr2est.h:7: In file included from ./../inst/include/nlmixr2est_RcppExports.h:8: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rprintf.c -o rprintf.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c merge3.c -o merge3.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lbfgsR.c -o lbfgsR.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/n1qn1/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lbfgsb3c/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utilc.c -o utilc.o clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o nlmixr2est.so uninformativeEtas.o nlm.o filterNormalLike.o inner.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -llapack -L/home/hornik/tmp/R-d-clang-19/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-19/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/nlmixr2est.Rcheck/00LOCK-nlmixr2est/00new/nlmixr2est/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmixr2est)