nmTest({ test_that("optim makes sense", { dsn <- data.frame(i=1:1000) dsn$time <- exp(rnorm(1000)) dsn$DV <- rbinom(1000,1,exp(-1+dsn$time)/(1+exp(-1+dsn$time))) mod <- function() { ini({ E0 <- 0.5 Em <- 0.5 E50 <- 2 g <- fix(2) }) model({ v <- E0+Em*time^g/(E50^g+time^g) ll(bin) ~ DV * v - log(1 + exp(v)) }) } fit2 <- nlmixr(mod, dsn, est="optim") expect_true(inherits(fit2, "nlmixr2.optim")) fit3 <- fit2 %>% ini(g=unfix) %>% nlmixr2(dsn, "optim", optimControl(covMethod="optim")) expect_true(inherits(fit3, "nlmixr2.optim")) one.cmt <- function() { ini({ tka <- 0.45 tcl <- log(c(0, 2.7, 100)) tv <- 3.45 add.sd <- 0.7 }) model({ ka <- exp(tka) cl <- exp(tcl) v <- exp(tv) linCmt() ~ add(add.sd) }) } fit1 <- nlmixr(one.cmt, nlmixr2data::theo_sd, est="optim", optimControl(method="L-BFGS-B")) expect_true(inherits(fit1, "nlmixr2.optim")) }) })