nmTest({ test_that("Test naive pooled", { one.cmt <- function() { ini({ ## You may label each parameter with a comment tka <- 0.45 # Ka tcl <- log(c(0, 2.7, 100)) # Log Cl ## This works with interactive models ## You may also label the preceding line with label("label text") tv <- 3.45; label("log V") ## the label("Label name") works with all models add.sd <- 0.7 }) model({ ka <- exp(tka) cl <- exp(tcl) v <- exp(tv) linCmt() ~ add(add.sd) }) } expect_error(suppressMessages(suppressWarnings(nlmixr(one.cmt, nlmixr2data::theo_sd, "foce"))), NA) expect_error(suppressMessages(suppressWarnings(nlmixr(one.cmt, nlmixr2data::theo_sd, "focei"))), NA) one.cmt <- function() { ini({ ## You may label each parameter with a comment tka <- 0.45 # Ka tcl <- log(c(0, 2.7, 100)) # Log Cl ## This works with interactive models ## You may also label the preceding line with label("label text") tv <- 3.45; label("log V") ## the label("Label name") works with all models eta.ka ~ 0 eta.cl ~ 0 eta.v ~ 0 add.sd <- 0.7 }) model({ ka <- exp(tka + eta.ka) cl <- exp(tcl + eta.cl) v <- exp(tv + eta.v) linCmt() ~ add(add.sd) }) } expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "foce"), NA) expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "focei"), NA) expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "saem")) one.cmt <- function() { ini({ ## You may label each parameter with a comment tka <- 0.45 # Ka tcl <- log(c(0, 2.7, 100)) # Log Cl ## This works with interactive models ## You may also label the preceding line with label("label text") tv <- 3.45; label("log V") ## the label("Label name") works with all models eta.ka ~ 0 eta.cl ~ 0.1 eta.v ~ 0 add.sd <- 0.7 }) model({ ka <- exp(tka + eta.ka) cl <- exp(tcl + eta.cl) v <- exp(tv + eta.v) linCmt() ~ add(add.sd) }) } expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "foce"), NA) expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "focei"), NA) expect_error(nlmixr(one.cmt, nlmixr2data::theo_sd, "saem"), NA) }) }) test_that("parameters are updated in fit object", { one.cmt <- function() { ini({ ## You may label each parameter with a comment tka <- 0.45 # Ka tcl <- log(c(0, 2.7, 100)) # Log Cl ## This works with interactive models ## You may also label the preceding line with label("label text") tv <- 3.45; label("log V") ## the label("Label name") works with all models add.sd <- 0.7 }) model({ ka <- exp(tka) cl <- exp(tcl) v <- exp(tv) linCmt() ~ add(add.sd) }) } fit <- suppressMessages(suppressWarnings(nlmixr(one.cmt, nlmixr2data::theo_sd, "focei"))) f1 <- one.cmt() expect_false(isTRUE(all.equal(f1$iniDf$est, fit$iniDf$est))) })