nmTest({ test_that("test lag with warfarin", { KA1Lode <- function() { ini({ # Where initial conditions/variables are specified ltlag <- log(0.2) #log Tlag (h) lka <- log(1.15) #log ka (/h) lcl <- log(0.135) #log Cl (L/h) lv <- log(8) #log V (L) prop.err <- 0.15 #proportional error (SD/mean) add.err <- 0.6 #additive error (mg/L) eta.tlag ~ 0.5 #IIV tlag eta.ka ~ 0.5 #IIV ka eta.cl ~ 0.1 #IIV cl eta.v ~ 0.1 #IIV v }) model({ # Where the model is specified tlag <- exp(ltlag + eta.tlag) ka <- exp(lka + eta.ka) cl <- exp(lcl + eta.cl) v <- exp(lv + eta.v) ## ODE example d/dt(gut)= - ka*gut d/dt(central)= ka*gut - (cl/v)*central lag(gut)=tlag cp=central/v ## where residual error is assumed to follow proportional and additive error cp ~ prop(prop.err) + add(add.err) }) } d <- nlmixr2data::warfarin %>% dplyr::filter(dvid=="cp") f <- nlmixr(KA1Lode, d, "focei") expect_true(f$objf < 250) }) })