nmTest({ one.compartment <- function() { ini({ tka <- 0.45 # Log Ka tcl <- 1 # Log Cl tv <- 3.45 # Log V eta.ka ~ 0.6 eta.cl ~ 0.3 eta.v ~ 0.1 add.sd <- 0.7 }) model({ ka <- exp(tka + eta.ka) cl <- exp(tcl + eta.cl) v <- exp(tv + eta.v) d/dt(depot) = -ka * depot d/dt(center) = ka * depot - cl / v * center cp = center / v cp ~ add(add.sd) }) keep = c("WT") drop = c("depot") } d <- theo_sd d$WT2 <- d$WT + 0.5 d$WT3 <- d$WT + 0.4 for (est in c("fo", "foi", "foce", "focei", "saem", "posthoc")) { test_that(paste0("keep/drop in ", est), { fitF <- suppressWarnings(suppressMessages(nlmixr(one.compartment, d, est=est))) fitF2 <- suppressWarnings(suppressMessages(nlmixr(one.compartment, d, est=est, table=list(keep="WT2", drop="center")))) expect_true(any(names(fitF) == "WT")) expect_true(!any(names(fitF) == "WT2")) expect_true(!any(names(fitF) == "WT3")) expect_true(!any(names(fitF) == "depot")) expect_true(any(names(fitF) == "center")) expect_true(any(names(fitF) == "dosenum")) expect_true(!any(names(fitF) == "rxLambda")) expect_true(!any(names(fitF) == "rxYj")) expect_true(!any(names(fitF2) == "WT")) expect_true(any(names(fitF2) == "WT2")) expect_true(!any(names(fitF) == "WT3")) expect_true(any(names(fitF2) == "depot")) expect_true(!any(names(fitF2) == "center")) expect_true(any(names(fitF2) == "dosenum")) expect_true(!any(names(fitF2) == "rxLambda")) expect_true(!any(names(fitF2) == "rxYj")) }) } })