R Under development (unstable) (2023-04-21 r84298 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

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> library(testthat)
> library(rxode2)
rxode2 2.0.13 using 2 threads (see ?getRxThreads)
  no cache: create with `rxCreateCache()`
> library(nlmixr2est)
Loading required package: nlmixr2data
> verbose_minimization <- FALSE
> test_check("nlmixr2est")

R Under development (unstable) (2023-04-21 r84298 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

>     library(nlmixr2est)
Loading required package: nlmixr2data
>     rxode2::rxClean()
>     one.cmt <- function() {
+         ini({
+             tka <- 0.45
+             tcl <- log(c(0, 2.7, 100))
+             tv <- 3.45
+             eta.ka ~ 0.6
+             eta.cl ~ 0.3
+             eta.v ~ 0.1
+             add.sd <- 0.7
+         })
+         model({
+             ka <- exp(tka + eta.ka)
+             cl <- exp(tcl + eta.cl)
+             v <- exp(tv + eta.v)
+             linCmt() ~ add(add.sd)
+         })
+     }
>     fit <- nlmixr(one.cmt, theo_sd, est = "saem", control = saemControl(print = 0, 
+         nBurn = 1, nEm = 1))
ℹ parameter labels from comments are typically ignored in non-interactive mode
ℹ Need to run with the source intact to parse comments
→ loading into symengine environment...
→ pruning branches (`if`/`else`) of saem model...
✔ done
→ finding duplicate expressions in saem model...
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

✔ done
using C compiler: 'gcc.exe (GCC) 12.2.0'

rxode2 2.0.13 using 2 threads (see ?getRxThreads)
  no cache: create with `rxCreateCache()`
Calculating covariance matrix
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

→ loading into symengine environment...
→ pruning branches (`if`/`else`) of saem model...
✔ done
→ finding duplicate expressions in saem predOnly model 0...
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

→ finding duplicate expressions in saem predOnly model 1...
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

→ finding duplicate expressions in saem predOnly model 2...
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

✔ done
using C compiler: 'gcc.exe (GCC) 12.2.0'

→ Calculating residuals/tables
✔ done
→ compress origData in nlmixr2 object, save 5952
→ compress phiM in nlmixr2 object, save 280
→ compress parHist in nlmixr2 object, save 1576
→ compress saem0 in nlmixr2 object, save 24824
>     saveRDS(fit, "fit.rds")
> 
> proc.time()
   user  system elapsed 
   8.35    1.71   15.75 
Calculating -2LL by Gaussian quadrature (nnodes=3,nsd=1.6)
[====|====|====|====|====|====|====|====|====|====] 0:00:00 

i parameter labels from comments will be replaced by 'label()'
using C compiler: 'gcc.exe (GCC) 12.2.0'


[ FAIL 0 | WARN 0 | SKIP 0 | PASS 158 ]
> ## test_check("nlmixr2est", stop_on_failure = FALSE, wrap=TRUE,
> ##            reporter = testthat::LocationReporter)
> 
> proc.time()
   user  system elapsed 
  15.06    2.96   48.78