R Under development (unstable) (2025-05-04 r88189 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Simple Run-Time Tests for mcrPlot
> # 
> # Author: Tobias Verbeke
> ###############################################################################
> 
> require(nlcv)
Loading required package: nlcv
Loading required package: a4Core
Loading required package: MLInterfaces
Loading required package: Rcpp
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: XML
Loading required package: cluster
Loading required package: xtable

nlcv version 0.3.6

> data(nlcvRF_R)
> data(nlcvTT_R)
> 
> ### layout FALSE
> 
> layout(matrix(1:4, ncol = 2), height = c(6, 1, 6, 1))
> mcrPlot_RF_R <- mcrPlot(nlcvRF_R, plot = TRUE, optimalDots = TRUE, layout = FALSE, main = 'RF selection')
> mcrPlot_TT_R <- mcrPlot(nlcvTT_R, plot = TRUE, optimalDots = TRUE, layout = FALSE, main = 'T selection')
> layout(1)
> 
> plot(1:10)
> plot(1:10)
> 
> ### layout TRUE
> 
> mcrPlot_TT <- mcrPlot(nlcvTT_R, plot = TRUE, optimalDots = TRUE,
+     layout = TRUE, main = "t-test selection")
> 
> plot(1:10)
> plot(1:10)
> 
> proc.time()
   user  system elapsed 
   7.42    0.54    7.95