* using log directory 'd:/RCompile/CRANincoming/R-devel/nimblewomble.Rcheck' * using R version 4.5.0 RC (2025-04-03 r88103 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'nimblewomble/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'nimblewomble' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Aritra Halder ' New submission Possibly misspelled words in DESCRIPTION: Banerjee (17:76, 17:153) Baysian (17:23) Dey (17:166) Gelfand (17:89) Halder (17:145) Wombling (3:17, 17:31) Reading CITATION file fails with A bibentry of bibtype 'Article' has to specify the field: journal when package is not installed. The Title field should be in title case. Current version is: 'Bayesian Wombling using nimble' In title case that is: 'Bayesian Wombling using Nimble' The Description field contains and Gelfand (2006) and Halder, Banerjee and Dey (2024) . Please write DOIs as . * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'nimblewomble' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Invalid citation information in 'inst/CITATION': Error in .bibentry_check_bibentry1(rval): A bibentry of bibtype 'Article' has to specify the field: journal * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: 'coda' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s] NOTE curvatures_gaussian: no visible global function definition for 'nimDim' curvatures_gaussian: no visible global function definition for 'nimMatrix' curvatures_gaussian: no visible global function definition for 'inverse' curvatures_gaussian: no visible global function definition for 'rmnorm_chol' curvatures_gaussian: no visible global function definition for 'nimCat' curvatures_matern2: no visible global function definition for 'nimDim' curvatures_matern2: no visible global function definition for 'nimMatrix' curvatures_matern2: no visible global function definition for 'inverse' curvatures_matern2: no visible global function definition for 'rmnorm_chol' curvatures_matern2: no visible global function definition for 'nimCat' gamma1.mcov1: no visible global function definition for 'nimDim' gamma1.mcov1: no visible global function definition for 'nimMatrix' gamma1.mcov1: no visible global function definition for 'nimSeq' gamma1n2.gauss: no visible global function definition for 'nimDim' gamma1n2.gauss: no visible global function definition for 'nimMatrix' gamma1n2.gauss: no visible global function definition for 'inprod' gamma1n2.mcov2: no visible global function definition for 'nimDim' gamma1n2.mcov2: no visible global function definition for 'nimMatrix' gamma1n2.mcov2: no visible global function definition for 'nimSeq' gamma_int: no visible global function definition for 'nimSeq' gaussian: no visible global function definition for 'nimDim' gaussian: no visible global function definition for 'nimMatrix' gp_fit: no visible global function definition for 'dist' gp_fit: no visible global function definition for 'quantile' gp_fit: no visible binding for global variable 'quantile' gradients_matern1: no visible global function definition for 'nimDim' gradients_matern1: no visible global function definition for 'nimMatrix' gradients_matern1: no visible global function definition for 'inverse' gradients_matern1: no visible global function definition for 'rmnorm_chol' gradients_matern1: no visible global function definition for 'nimCat' materncov1: no visible global function definition for 'nimDim' materncov1: no visible global function definition for 'nimMatrix' materncov2: no visible global function definition for 'nimDim' materncov2: no visible global function definition for 'nimMatrix' pnorm_nimble: no visible global function definition for 'nimSeq' sp_ggplot: no visible global function definition for 'st_coordinates' sp_ggplot: no visible global function definition for 'st_transform' sp_ggplot: no visible global function definition for 'st_as_sf' sp_ggplot: no visible global function definition for 'as' sp_ggplot: no visible global function definition for 'proj4string<-' sp_ggplot: no visible global function definition for 'proj4string' sp_ggplot: no visible global function definition for 'over' sp_ggplot: no visible global function definition for 'as.image.SpatialGridDataFrame' sp_ggplot: no visible global function definition for 'project' sp_ggplot: no visible global function definition for 'rast' sp_ggplot: no visible global function definition for 'ggplot' sp_ggplot: no visible global function definition for 'theme_bw' sp_ggplot: no visible global function definition for 'layer_spatial' sp_ggplot: no visible global function definition for 'aes' sp_ggplot: no visible global function definition for 'after_stat' sp_ggplot: no visible binding for global variable 'band1' sp_ggplot: no visible global function definition for 'labs' sp_ggplot: no visible global function definition for 'scale_fill_distiller' sp_ggplot: no visible global function definition for 'geom_contour2' sp_ggplot: no visible global function definition for 'aes_string' sp_ggplot: no visible global function definition for 'geom_sf' sp_ggplot: no visible global function definition for 'geom_point' sp_ggplot: no visible global function definition for 'theme' sp_ggplot: no visible global function definition for 'element_line' sp_ggplot: no visible global function definition for 'element_text' sp_ggplot: no visible global function definition for 'unit' sp_ggplot: no visible global function definition for 'element_rect' sp_ggplot: no visible global function definition for 'geom_raster' sp_ggplot: no visible global function definition for 'ggtitle' sp_ggplot: no visible global function definition for 'xlim' sp_ggplot: no visible global function definition for 'ylim' sprates: no visible global function definition for 'dist' sprates : : no visible binding for global variable 'median' sprates: no visible binding for global variable 'quantile' spwombling: no visible global function definition for 'dist' spwombling : : no visible binding for global variable 'median' spwombling: no visible binding for global variable 'quantile' wombling_gaussian: no visible global function definition for 'nimDim' wombling_gaussian: no visible global function definition for 'nimMatrix' wombling_gaussian: no visible global function definition for 'inverse' wombling_gaussian: no visible global function definition for 'rmnorm_chol' wombling_gaussian: no visible global function definition for 'nimCat' wombling_matern1: no visible global function definition for 'nimDim' wombling_matern1: no visible global function definition for 'nimMatrix' wombling_matern1: no visible global function definition for 'inverse' wombling_matern1: no visible global function definition for 'inprod' wombling_matern1: no visible global function definition for 'rnorm' wombling_matern1: no visible global function definition for 'nimCat' wombling_matern2: no visible global function definition for 'nimDim' wombling_matern2: no visible global function definition for 'nimMatrix' wombling_matern2: no visible global function definition for 'inverse' wombling_matern2: no visible global function definition for 'rmnorm_chol' wombling_matern2: no visible global function definition for 'nimCat' zXbeta: no visible global function definition for 'nimDim' zXbeta: no visible global function definition for 'nimMatrix' zbeta_gaussian: no visible global function definition for 'nimMatrix' zbeta_gaussian: no visible global function definition for 'inverse' zbeta_gaussian: no visible global function definition for 'rmnorm_chol' zbeta_matern1: no visible global function definition for 'nimMatrix' zbeta_matern1: no visible global function definition for 'inverse' zbeta_matern1: no visible global function definition for 'rmnorm_chol' zbeta_matern2: no visible global function definition for 'nimMatrix' zbeta_matern2: no visible global function definition for 'inverse' zbeta_matern2: no visible global function definition for 'rmnorm_chol' zbeta_samples: no visible global function definition for 'dist' Undefined global functions or variables: aes aes_string after_stat as as.image.SpatialGridDataFrame band1 dist element_line element_rect element_text geom_contour2 geom_point geom_raster geom_sf ggplot ggtitle inprod inverse labs layer_spatial median nimCat nimDim nimMatrix nimSeq over proj4string proj4string<- project quantile rast rmnorm_chol rnorm scale_fill_distiller st_as_sf st_coordinates st_transform theme theme_bw unit xlim ylim Consider adding importFrom("methods", "as") importFrom("stats", "dist", "median", "quantile", "rnorm") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'sp_ggplot.Rd' 'clr.pt' 'bound.box' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... NONE * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * checking for code which exercises the package ... WARNING No examples, no tests, no vignettes * DONE Status: 4 WARNINGs, 2 NOTEs