* installing *source* package ‘nimble’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++-15 -std=gnu++17 accepts -g... yes
working on eigen
checking how to run the C++ preprocessor... clang++-15 -std=gnu++17 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking Eigen/Dense usability... no
checking Eigen/Dense presence... no
checking for Eigen/Dense... no
Using the version of Eigen provided with NIMBLE
ENABLE_LIB=true
configure: creating ./config.status
config.status: creating inst/make/Makevars
config.status: creating inst/make/Makevars_lib
config.status: creating R/config.R
config.status: creating src/Makevars
removing debugging flags
/home/hornik/tmp/R/bin/Rscript --vanilla ./customizeMakeconf.R
Building libnimble
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nodeFun.cpp -o nodeFun.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c accessorClasses.cpp -o accessorClasses.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimbleCppAD.cpp -o nimbleCppAD.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c RcppUtils.cpp -o RcppUtils.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c EigenTypedefs.cpp -o EigenTypedefs.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c eigenUsingClasses.cpp -o eigenUsingClasses.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c RcppNimbleUtils.cpp -o RcppNimbleUtils.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c Utils.cpp -o Utils.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c NamedObjects.cpp -o NamedObjects.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c ModelClassUtils.cpp -o ModelClassUtils.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c dists.cpp -o dists.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDists.cpp -o nimDists.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c dllFinalizer.cpp -o dllFinalizer.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimbleGraph.cpp -o nimbleGraph.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c smartPtrs.cpp -o smartPtrs.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c predefinedNimbleLists.cpp -o predefinedNimbleLists.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimOptim.cpp -o nimOptim.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_classes.cpp -o nimDerivs_atomic_classes.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_matmult.cpp -o nimDerivs_atomic_matmult.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_matinverse.cpp -o nimDerivs_atomic_matinverse.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_backsolve.cpp -o nimDerivs_atomic_backsolve.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_forwardsolve.cpp -o nimDerivs_atomic_forwardsolve.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_cholesky.cpp -o nimDerivs_atomic_cholesky.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_solve_base.cpp -o nimDerivs_atomic_solve_base.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_pow_int.cpp -o nimDerivs_atomic_pow_int.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_zround.cpp -o nimDerivs_atomic_zround.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_log_pow_int.cpp -o nimDerivs_atomic_log_pow_int.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -O3 -Wall -pedantic  -c nimDerivs_atomic_probit.cpp -o nimDerivs_atomic_probit.o
linking libnimble.so
Linux   
clang++-15  -std=gnu++17 -shared -o libnimble.so  nodeFun.o accessorClasses.o nimbleCppAD.o RcppUtils.o EigenTypedefs.o eigenUsingClasses.o RcppNimbleUtils.o Utils.o NamedObjects.o ModelClassUtils.o dists.o nimDists.o dllFinalizer.o nimbleGraph.o smartPtrs.o predefinedNimbleLists.o nimOptim.o nimDerivs_atomic_classes.o nimDerivs_atomic_matmult.o nimDerivs_atomic_matinverse.o nimDerivs_atomic_backsolve.o nimDerivs_atomic_forwardsolve.o nimDerivs_atomic_cholesky.o nimDerivs_atomic_solve_base.o nimDerivs_atomic_pow_int.o nimDerivs_atomic_zround.o nimDerivs_atomic_log_pow_int.o nimDerivs_atomic_probit.o 
rm *.o
rm -f Makeconf
** libs
using C++ compiler: ‘Debian clang version 15.0.6’
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppUtils.cpp -o RcppUtils.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dists.cpp -o dists.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c eigenUsingClasses.cpp -o eigenUsingClasses.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c nimble.cpp -o nimble.o
clang++-15  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c nimbleGraph.cpp -o nimbleGraph.o
clang++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o nimble.so RcppUtils.o dists.o eigenUsingClasses.o nimble.o nimbleGraph.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/nimble.Rcheck/00LOCK-nimble/00new/nimble/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nimble)