* using log directory ‘/srv/hornik/tmp/CRAN/nhdplusTools.Rcheck’
* using R Under development (unstable) (2023-08-27 r85021)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (10)
    GNU Fortran (Debian 13.2.0-1) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘nhdplusTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nhdplusTools’ version ‘0.7.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/9s] NOTE
Maintainer: ‘David Blodgett <dblodgett@usgs.gov>’

Found the following (possibly) invalid URLs:
  URL: http://docs.opengeospatial.org/is/14-111r6/14-111r6.html#annexD_1 (moved to https://docs.ogc.org/is/14-111r6/14-111r6.html#annexD_1)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://owi.usgs.gov/R/dataRetrieval.html
    From: inst/doc/plot_nhdplus.html
    Status: Error
    Message: Could not resolve host: owi.usgs.gov
  URL: https://pubs.er.usgs.gov/publication/70216698 (moved to https://pubs.usgs.gov/publication/70216698)
    From: inst/doc/advanced_network.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.hydroshare.org/resource/6092c8a62fac45be97a09bfd0b0bf726/
    From: man/download_vaa.Rd
          man/get_vaa.Rd
          man/get_vaa_names.Rd
          man/get_vaa_path.Rd
    Status: 403
    Message: Forbidden
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nhdplusTools’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/30s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
get_catchment_characteristics 0.306  0.052  16.814
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [27s/31s] ERROR
  Running ‘testthat.R’ [27s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library("testthat")
  > 
  > test_check("nhdplusTools")
  Loading required package: nhdplusTools
  Starting 2 test processes
  [ FAIL 3 | WARN 1 | SKIP 52 | PASS 311 ]
  
  ══ Skipped tests (52) ══════════════════════════════════════════════════════════
  • On CRAN (52): 'test_00_plot_bbox_nhdplus.R:5:3',
    'test_00_plot_integration_nhdplus.R:6:3',
    'test_00_plot_local_extra_nhdplus.R:9:3', 'test_00_plot_local_nhdplus.R:9:3',
    'test_01_get_nldi.R:5:3', 'test_01_get_nldi.R:25:3',
    'test_01_get_nldi.R:85:3', 'test_01_get_nldi.R:113:3',
    'test_01_get_nldi.R:130:3', 'test_01_get_nldi.R:167:3',
    'test_01_get_nldi.R:203:3', 'test_01_get_nldi.R:246:3',
    'test_00_plot_nhdplus.R:5:3', 'test_00_plot_nhdplus.R:88:3',
    'test_00_plot_nhdplus.R:130:3', 'test_00_plot_nhdplus.R:159:3',
    'test_00_plot_nhdplus.R:195:3', 'test_02_subset.R:135:3',
    'test_02_subset.R:191:3', 'test_03_get_functions.R:21:3',
    'test_03_get_functions.R:48:3', 'test_03_get_functions.R:79:3',
    'test_03_get_functions.R:135:3', 'test_03_get_functions.R:206:3',
    'test_03_get_functions.R:222:3', 'test_03_get_functions.R:235:3',
    'test_03_get_functions.R:253:3', 'test_03_get_functions.R:260:3',
    'test_02_subset_extras.R:151:3', 'test_02_subset_extras.R:201:3',
    'test_get_nhdplus.R:8:3', 'test_get_nhdplus.R:29:3',
    'test_get_nhdplus.R:49:3', 'test_get_nhdplushr.R:8:3',
    'test_get_nhdplushr.R:15:3', 'test_get_nhdplushr.R:41:3',
    'test_get_nhdplushr.R:58:3', 'test_get_nhdplushr.R:100:3',
    'test_get_nhdplushr.R:124:3', 'test_get_nhdplushr.R:142:3',
    'test_get_codes.R:4:3', 'test_get_path.R:75:3', 'test_index.R:10:5',
    'test_index.R:58:3', 'test_map_nhdplus.R:4:3', 'test_navigate.R:4:3',
    'test_navigate.R:71:3', 'test_nhdplusTools.R:41:3',
    'test_nhdplusTools.R:50:3', 'test_rescale_catchments.R:3:3',
    'test_run_plus_attributes.R:21:3', 'test_get_vaa.R:4:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_get_vaa.R:63:3'): catchment chars ────────────────────────────
  names(dat) (`actual`) not equal to c("characteristic_id", "comid", "characteristic_value", "percent_nodata") (`expected`).
  
  `actual` is NULL
  `expected` is a character vector ('characteristic_id', 'comid', 'characteristic_value', 'percent_nodata')
  ── Failure ('test_get_vaa.R:66:3'): catchment chars ────────────────────────────
  all(c("CAT_BFI", "ACC_BFI", "TOT_BFI") %in% dat$characteristic_id) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test_get_vaa.R:68:3'): catchment chars ────────────────────────────
  all(walker_catchment$FEATUREID %in% dat$comid) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 3 | WARN 1 | SKIP 52 | PASS 311 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [10s/10s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs