* using log directory 'd:/RCompile/CRANincoming/R-devel/ngme2.Rcheck'
* using R Under development (unstable) (2024-01-14 r85805 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ngme2/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ngme2' version '0.6.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Xiaotian Jin <xiaotian.jin@kaust.edu.sa>'

New submission

Suggests or Enhances not in mainstream repositories:
  INLA

Found the following (possibly) invalid file URI:
  URI: spde_nongaussian.html
    From: inst/doc/pred_and_est.html

Size of tarball: 7837810 bytes
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'INLA'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ngme2' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... WARNING
File 'ngme2/libs/x64/ngme2.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    Objects: 'RcppExports.o', 'estimate.o', 'optimizer.o', 'block.o',
      'latent.o', 'ngme.o', 'latents/ar1.o', 'latents/matern.o',
      'latents/tensorprod.o', 'latents/randeff.o', 'latents/bivar.o'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [179s] OK
  Running 'testthat.R' [179s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [410s] ERROR
Error(s) in re-building vignettes:
--- re-building 'AR1-model.Rmd' using rmarkdown
--- finished re-building 'AR1-model.Rmd'

--- re-building 'Installation_and_configuration.Rmd' using rmarkdown
--- finished re-building 'Installation_and_configuration.Rmd'

--- re-building 'RW-model.Rmd' using rmarkdown
--- finished re-building 'RW-model.Rmd'

--- re-building 'SPDE-model.Rmd' using rmarkdown
--- finished re-building 'SPDE-model.Rmd'

--- re-building 'bivariate.Rmd' using rmarkdown
--- finished re-building 'bivariate.Rmd'

--- re-building 'matern-on-graph.Rmd' using rmarkdown
--- finished re-building 'matern-on-graph.Rmd'

--- re-building 'pred_and_est.Rmd' using rmarkdown
--- finished re-building 'pred_and_est.Rmd'

--- re-building 'random-effect.Rmd' using rmarkdown
--- finished re-building 'random-effect.Rmd'

--- re-building 'replicate.Rmd' using rmarkdown
--- finished re-building 'replicate.Rmd'

--- re-building 'tensor_product.Rmd' using rmarkdown

Quitting from lines 84-113 [ar-matern] (tensor_product.Rmd)
Error: processing vignette 'tensor_product.Rmd' failed with diagnostics:
there is no package called 'INLA'
--- failed re-building 'tensor_product.Rmd'

SUMMARY: processing the following file failed:
  'tensor_product.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs