* using log directory 'd:/RCompile/CRANincoming/R-devel/neuroimaGene.Rcheck'
* using R version 4.6.0 RC (2026-04-22 r89945 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-04-24 20:45:07 UTC
* checking for file 'neuroimaGene/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'neuroimaGene' version '0.1.3'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Xavier Bledsoe <xavier.bledsoe@vanderbilt.edu>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Bledsoe (19:59)
  GReX (15:58)
  Mowinckel (22:19)
  NIDPs (17:26)
  Neuroimaging (3:32, 14:60)
  Transcriptomic (3:8)
  neuroimaging (17:3)
  transcriptome (18:66)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2026-03-05 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'neuroimaGene' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'neuroimaGene-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
> 
> ### ** Examples
> 
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Warning in gzfile(file, "rb") :
  cannot open compressed file '', probable reason 'Invalid argument'
Error in gzfile(file, "rb") : cannot open the connection
Calls: neuro_vis -> readRDS -> gzfile
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'neuroimaGene.Rmd' using rmarkdown

Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gzfile()`:
! cannot open the connection
---
Backtrace:
    ▆
 1. └─neuroimaGene::neuro_vis(...)
 2.   └─base::readRDS(system.file("extdata", "dkt_atlas_new.rda", package = "neuroimaGene2"))
 3.     └─base::gzfile(file, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'neuroimaGene.Rmd'

SUMMARY: processing the following file failed:
  'neuroimaGene.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE