* using log directory ‘/srv/hornik/tmp/CRAN/neuroim2.Rcheck’
* using R Under development (unstable) (2023-12-21 r85715)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (2)
    Debian flang-new version 17.0.6 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘neuroim2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘neuroim2’ version ‘0.8.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Bradley R Buchsbaum <brad.buchsbaum@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  AFNI (13:50)
  NIfTI (13:5)
  Neuroimaging (3:35)
  neuroimaging (12:12)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘neuroim2’ can be installed ... [24s/24s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/14s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) NeuroVecSeq-methods.Rd:8-10: Lost braces
     8 |           def=function(x, i, j, k) {
       |                                    ^
checkRd: (-1) NeuroVecSeq-methods.Rd:23-25: Lost braces
    23 |           def=function(x, i, j, k) {
       |                                    ^
checkRd: (-1) NeuroVecSeq-methods.Rd:31-33: Lost braces
    31 |           def=function(x,i) {
       |                             ^
checkRd: (-1) NeuroVecSeq-methods.Rd:39-49: Lost braces
    39 |           def=function(x,i) {
       |                             ^
checkRd: (-1) NeuroVecSeq-methods.Rd:41-43: Lost braces
    41 |             if (length(rois) == 1) {
       |                                    ^
checkRd: (-1) NeuroVecSeq-methods.Rd:43-45: Lost braces
    43 |             } else if (length(rois) == 2) {
       |                                           ^
checkRd: (-1) NeuroVecSeq-methods.Rd:45-48: Lost braces
    45 |             } else {
       |                    ^
checkRd: (-1) series-methods.Rd:88-96: Lost braces
    88 |           def=function(x, i, j, k) {
       |                                    ^
checkRd: (-1) series-methods.Rd:89-93: Lost braces
    89 |             if (missing(j) && missing(k)) {
       |                                           ^
checkRd: (-1) series-methods.Rd:93-95: Lost braces
    93 |             } else {
       |                    ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/11s] NOTE
Examples with CPU time > 2.5 times elapsed time
                  user system elapsed  ratio
resample-methods 1.545  0.226   0.126 14.056
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [88s/71s] OK
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [88s/71s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [109s/113s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs