downloading reverse dependencies ... downloading BayesDLMfMRI_0.0.3.tar.gz ... ok downloading BSPBSS_1.0.6.tar.gz ... ok downloading CICA_1.1.1.tar.gz ... ok downloading freesurfer_1.8.1.tar.gz ... ok downloading fslr_2.27.0.tar.gz ... ok downloading WhiteStripe_2.5.0.tar.gz ... ok installing dependencies ‘BayesGPfit’, ‘brainR’, ‘fslr’, ‘neurobase’, ‘rstiefel’ begin installing package ‘brainR’ begin installing package ‘neurobase’ begin installing package ‘rstiefel’ begin installing package ‘BayesGPfit’ * installing *source* package ‘rstiefel’ ... ** this is package ‘rstiefel’ version ‘1.0.1’ ** package ‘rstiefel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprwDCVg/R.INSTALL303eb72a6ed9dc/rstiefel/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rstiefel.c -o rstiefel.o rstiefel.c: In function ‘rtheta_bmf’: rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 69 | return th; | ^~ rstiefel.c:44:10: note: ‘th’ was declared here 44 | double th; | ^~ rstiefel.c: In function ‘rtheta_bing’: rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 136 | return th; | ^~ rstiefel.c:119:10: note: ‘th’ was declared here 119 | double th; | ^~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprwDCVg/R.INSTALL303eb72a6ed9dc/rstiefel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstiefel) * installing *source* package ‘BayesGPfit’ ... ** this is package ‘BayesGPfit’ version ‘1.1.0’ ** package ‘BayesGPfit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplzPEfQ/R.INSTALL303eb37069a1b/BayesGPfit/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BayesGPfit_init.c -o BayesGPfit_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GPlib.cpp -o GPlib.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hermite_polynomial.cpp -o hermite_polynomial.o hermite_polynomial.cpp: In function ‘void timestamp()’: hermite_polynomial.cpp:3191:10: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 3191 | size_t len; | ^~~ hermite_polynomial.cpp: In function ‘void imtqlx(int, double*, double*, double*)’: hermite_polynomial.cpp:2638:20: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized] 2638 | for ( ii = 2; ii <= m; ii++ ) | ~~~^~~~ hermite_polynomial.cpp:2545:7: note: ‘m’ was declared here 2545 | int m; | ^ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BayesGPfit.so BayesGPfit_init.o GPlib.o hermite_polynomial.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplzPEfQ/R.INSTALL303eb37069a1b/BayesGPfit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BayesGPfit/00new/BayesGPfit/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesGPfit) * installing *source* package ‘brainR’ ... ** this is package ‘brainR’ version ‘1.7.0’ ** package ‘brainR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brainR) * installing *source* package ‘neurobase’ ... ** this is package ‘neurobase’ version ‘1.34.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neurobase) begin installing package ‘fslr’ * installing *source* package ‘fslr’ ... ** this is package ‘fslr’ version ‘2.27.0’ ** package ‘fslr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fslr) checking neurobase_1.34.0.tar.gz ... checking BayesDLMfMRI_0.0.3.tar.gz ... checking BSPBSS_1.0.6.tar.gz ... checking CICA_1.1.1.tar.gz ... checking freesurfer_1.8.1.tar.gz ... checking fslr_2.27.0.tar.gz ... checking WhiteStripe_2.5.0.tar.gz ... Depends: Package: neurobase Depends: oro.nifti (>= 0.11.3), R (>= 3.2.0) Imports: methods, abind, matrixStats, R.utils, graphics, grDevices, stats, RNifti Timings: user system elapsed neurobase 115.493 13.163 132.064 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 5 Check results summary: neurobase ... OK rdepends_BayesDLMfMRI ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_BSPBSS ... OK rdepends_CICA ... OK rdepends_freesurfer ... OK rdepends_fslr ... OK rdepends_WhiteStripe ... OK Check results changes: Package: BayesDLMfMRI Check: CRAN incoming feasibility Old result: NOTE Package: BSPBSS [Old version: 1.0.5, New version: 1.0.6] Check: C++ specification Old result: NOTE Package: BSPBSS [Old version: 1.0.5, New version: 1.0.6] Check: whether package can be installed Old result: WARNING New result: OK Package: CICA Check: CRAN incoming feasibility Old result: NOTE