downloading reverse dependencies ... downloading BayesDLMfMRI_0.0.3.tar.gz ... ok downloading BSPBSS_1.0.5.tar.gz ... ok downloading CICA_1.1.1.tar.gz ... ok downloading freesurfer_1.8.1.tar.gz ... ok downloading fslr_2.25.3.tar.gz ... ok downloading WhiteStripe_2.5.0.tar.gz ... ok installing dependencies ‘BayesGPfit’, ‘brainR’, ‘fslr’, ‘multiway’, ‘neurobase’, ‘rstiefel’ also installing the dependency ‘CMLS’ begin installing package ‘CMLS’ begin installing package ‘brainR’ begin installing package ‘neurobase’ begin installing package ‘rstiefel’ begin installing package ‘BayesGPfit’ * installing *source* package ‘rstiefel’ ... ** this is package ‘rstiefel’ version ‘1.0.1’ ** package ‘rstiefel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnqB2vC/R.INSTALL26c6b6259bd27/rstiefel/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rstiefel.c -o rstiefel.o rstiefel.c: In function ‘rtheta_bmf’: rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 69 | return th; | ^~ rstiefel.c:44:10: note: ‘th’ was declared here 44 | double th; | ^~ rstiefel.c: In function ‘rtheta_bing’: rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized] 136 | return th; | ^~ rstiefel.c:119:10: note: ‘th’ was declared here 119 | double th; | ^~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnqB2vC/R.INSTALL26c6b6259bd27/rstiefel/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstiefel) * installing *source* package ‘CMLS’ ... ** this is package ‘CMLS’ version ‘1.0-1’ ** package ‘CMLS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CMLS) begin installing package ‘multiway’ * installing *source* package ‘BayesGPfit’ ... ** this is package ‘BayesGPfit’ version ‘1.1.0’ ** package ‘BayesGPfit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoLJGW4/R.INSTALL26c6f3b3d7d89/BayesGPfit/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BayesGPfit_init.c -o BayesGPfit_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GPlib.cpp -o GPlib.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hermite_polynomial.cpp -o hermite_polynomial.o hermite_polynomial.cpp: In function ‘void timestamp()’: hermite_polynomial.cpp:3191:10: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 3191 | size_t len; | ^~~ hermite_polynomial.cpp: In function ‘void imtqlx(int, double*, double*, double*)’: hermite_polynomial.cpp:2545:7: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized] 2545 | int m; | ^ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BayesGPfit.so BayesGPfit_init.o GPlib.o hermite_polynomial.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoLJGW4/R.INSTALL26c6f3b3d7d89/BayesGPfit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BayesGPfit/00new/BayesGPfit/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesGPfit) * installing *source* package ‘neurobase’ ... ** this is package ‘neurobase’ version ‘1.33.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neurobase) begin installing package ‘fslr’ * installing *source* package ‘brainR’ ... ** this is package ‘brainR’ version ‘1.7.0’ ** package ‘brainR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brainR) * installing *source* package ‘multiway’ ... ** this is package ‘multiway’ version ‘1.0-7’ ** package ‘multiway’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiway) * installing *source* package ‘fslr’ ... ** this is package ‘fslr’ version ‘2.25.3’ ** package ‘fslr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fslr) checking neurobase_1.33.0.tar.gz ... checking BayesDLMfMRI_0.0.3.tar.gz ... checking BSPBSS_1.0.5.tar.gz ... checking CICA_1.1.1.tar.gz ... checking freesurfer_1.8.1.tar.gz ... checking fslr_2.25.3.tar.gz ... checking WhiteStripe_2.5.0.tar.gz ... Depends: Package: neurobase Depends: oro.nifti (>= 0.11.3), R (>= 3.2.0) Imports: methods, abind, matrixStats, R.utils, graphics, grDevices, stats, RNifti Timings: user system elapsed neurobase 112.624 15.24 130.779 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 3 3 Check results summary: neurobase ... OK rdepends_BayesDLMfMRI ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_BSPBSS ... NOTE * checking C++ specification ... NOTE rdepends_CICA ... OK rdepends_freesurfer ... OK rdepends_fslr ... NOTE * checking Rd cross-references ... NOTE rdepends_WhiteStripe ... OK Check results changes: Package: BayesDLMfMRI Check: CRAN incoming feasibility Old result: NOTE Package: CICA Check: CRAN incoming feasibility Old result: NOTE Package: WhiteStripe [Old version: 2.4.3, New version: 2.5.0] Check: Rd cross-references Old result: NOTE New result: OK