* using log directory 'd:/RCompile/CRANincoming/R-devel/networkUtils.Rcheck' * using R Under development (unstable) (2023-09-03 r85052 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'networkUtils/DESCRIPTION' ... OK * this is package 'networkUtils' version '1.0.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Fanzhou Liang ' New submission Possibly misspelled words in DESCRIPTION: Almende (5:34) VisNetwork (2:34) downloadnode (5:115) igraph (5:158) networkUtils (5:71) networkgraph (5:99) visNetwork (5:59) Size of tarball: 23427961 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... WARNING Found the following files with non-portable file names: man/figures/Screenshot 2023-06-10 at 16-56-19.png man/figures/Screenshot 2023-06-10 at 17-23-15.png These are not fully portable file names. See section 'Package structure' in the 'Writing R Extensions' manual. * checking serialization versions ... OK * checking whether package 'networkUtils' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'dplyr' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE create_demo_graph: no visible global function definition for 'runif' mod_visNetInteraction_server : : no visible global function definition for 'quantile' mod_visNetInteraction_server : : no visible global function definition for '.inc' mod_visNetModification_server : : : no visible global function definition for 'delete_edge_attr' mod_visNetModification_server : : : no visible global function definition for 'delete_graph_attr' plotPPPdensity: no visible global function definition for 'par' search_idx: no visible binding for global variable 'name' search_idx: no visible global function definition for 'make_empty_graph' search_idx: no visible global function definition for '.inc' simpleNetworkUtilApp_server: no visible binding for global variable 'graph' Undefined global functions or variables: .inc delete_edge_attr delete_graph_attr graph make_empty_graph name par quantile runif Consider adding importFrom("graphics", "par") importFrom("stats", "quantile", "runif") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Documented arguments not in \usage in documentation object 'mod_fileUploader_ui': 'input' 'output' 'session' Undocumented arguments in documentation object 'mod_visNetInteraction_ui' 'dev' 'hard_delete' Duplicated \argument entries in documentation object 'mod_visNetInteraction_ui': 'id' Documented arguments not in \usage in documentation object 'mod_visNetInteraction_ui': 'input' 'output' 'session' Undocumented arguments in documentation object 'modify_graph_i' 'visNetwork_graphChange' Documented arguments not in \usage in documentation object 'modify_graph_i': 'visNetwork_graphChage' Undocumented arguments in documentation object 'pasteDetails' '...' Documented arguments not in \usage in documentation object 'simpleNetworkUtilApp_server': 'graph' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... NOTE Found the following HTML validation problems: mod_visNet_.html:130:9 (mod_visNet_.Rd:83): Warning: anchor "mod_visNetInteraction_ui_:_id" already defined * DONE Status: 2 WARNINGs, 4 NOTEs