testthat::test_that("ttr_01 produces expected results", { # Synthetic test data test_data <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), epatient_15 = c(34, 5, 45, 2, 60), # Ages epatient_16 = c("Years", "Years", "Years", "Months", "Years"), eresponse_05 = rep(2205001, 5), earrest_01 = rep("No", 5), evitals_06 = c(100, 90, 80, 70, 85), evitals_07 = c(80, 90, 50, 60, 87), evitals_10 = c(110, 89, 88, 71, 85), evitals_12 = c(50, 60, 70, 80, 75), evitals_14 = c(30, 9, 8, 7, 31), evitals_23 = c(6, 7, 8, 9, 10), evitals_26 = c(3326007, 3326005, 3326003, 3326001, 3326007), edisposition_30 = c(4230013, 4230009, 4230013, 4230009, 4230013) ) # Run function with the first and last pain score columns result <- ttr_01( df = test_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, earrest_01_col = earrest_01, evitals_06_col = evitals_06, evitals_07_col = evitals_07, evitals_10_col = evitals_10, evitals_12_col = evitals_12, evitals_14_col = evitals_14, evitals_23_col = evitals_23, evitals_26_col = evitals_26, transport_disposition_col = edisposition_30 ) # Check structure testthat::expect_s3_class(result, "data.frame") testthat::expect_true(all(c("measure", "pop", "numerator", "denominator", "prop", "prop_label") %in% names(result))) # Check calculations testthat::expect_equal(sum(result$numerator), 5) testthat::expect_equal(sum(result$denominator), 5) testthat::expect_equal(result$prop[result$pop == "Adults"], 1) testthat::expect_equal(nrow(result), 2) # create tables to test correct functioning patient_table <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), incident_date = as.Date(c("2025-01-01", "2025-01-05", "2025-02-01", "2025-01-01", "2025-06-01")), patient_dob = as.Date(c("2000-01-01", "2020-01-01", "2023-02-01", "2023-01-01", "1970-06-01")), epatient_15 = c(25, 5, 2, 2, 55), # Ages epatient_16 = c("Years", "Years", "Years", "Years", "Years") ) # response table response_table <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), eresponse_05 = rep(2205001, 5), ) # arrest table arrest_table <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), earrest_01 = rep("No", 5) ) # vitals table vitals_table <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), evitals_06 = c(100, 90, 80, 70, 85), evitals_07 = c(80, 90, 50, 60, 87), evitals_10 = c(110, 89, 88, 71, 85), evitals_12 = c(50, 60, 70, 80, 75), evitals_14 = c(30, 9, 8, 7, 31), evitals_23 = c(6, 7, 8, 9, 10), evitals_26 = c(3326007, 3326005, 3326003, 3326001, 3326007), ) # disposition table disposition_table <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), edisposition_30 = c(4230013, 4230009, 4230013, 4230009, 4230013) ) # test the success of the function result <- ttr_01(patient_scene_table = patient_table, response_table = response_table, arrest_table = arrest_table, vitals_table = vitals_table, disposition_table = disposition_table, erecord_01_col = erecord_01, incident_date_col = incident_date, patient_DOB_col = patient_dob, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, earrest_01_col = earrest_01, evitals_06_col = evitals_06, evitals_07_col = evitals_07, evitals_10_col = evitals_10, evitals_12_col = evitals_12, evitals_14_col = evitals_14, evitals_23_col = evitals_23, evitals_26_col = evitals_26, transport_disposition_col = edisposition_30 ) # Check calculations testthat::expect_equal(sum(result$numerator), 5) testthat::expect_equal(sum(result$denominator),5) testthat::expect_equal(result$prop[result$pop == "Adults"], 1) testthat::expect_equal(nrow(result), 2) }) testthat::test_that("ttr_01 handles missing data correctly", { # Synthetic test data test_data <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), epatient_15 = c(34, 5, 45, 2, 60), # Ages epatient_16 = c("Years", "Years", "Years", "Months", "Years"), eresponse_05 = rep(2205001, 5), earrest_01 = rep("No", 5), evitals_06 = c(NA, 90, 80, 70, 85), evitals_07 = c(80, 90, 50, 60, 87), evitals_10 = c(110, 89, 88, 71, 85), evitals_12 = c(50, NA, 70, 80, 75), evitals_14 = c(30, 9, 8, 7, 31), evitals_23 = c(6, 7, 8, 9, NA), evitals_26 = c(3326007, 3326005, 3326003, NA, 3326007), edisposition_30 = c(4230013, 4230009, NA, 4230009, 4230013) ) # run the function with first and last # pain scale columns result <- ttr_01( df = test_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, earrest_01_col = earrest_01, evitals_06_col = evitals_06, evitals_07_col = evitals_07, evitals_10_col = evitals_10, evitals_12_col = evitals_12, evitals_14_col = evitals_14, evitals_23_col = evitals_23, evitals_26_col = evitals_26, transport_disposition_col = edisposition_30 ) testthat::expect_true(nrow(result) > 0) testthat::expect_true(all(!is.na(result$denominator))) }) testthat::test_that("ttr_01 returns empty result for non-matching criteria", { # Synthetic test data test_data <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), epatient_15 = c(34, 5, 45, 2, 60), # Ages epatient_16 = c("Years", "Years", "Years", "Months", "Years"), eresponse_05 = rep(2205001, 5), earrest_01 = rep("No", 5), evitals_06 = c(100, 90, 80, 70, 85), evitals_07 = c(80, 90, 50, 60, 87), evitals_10 = c(110, 89, 88, 71, 85), evitals_12 = c(50, 60, 70, 80, 75), evitals_14 = c(30, 9, 8, 7, 31), evitals_23 = c(6, 7, 8, 9, 10), evitals_26 = c(3326007, 3326005, 3326003, 3326001, 3326007), edisposition_30 = rep("a transport!", 5) ) # run the function with the # initial and last pain scale # columns result <- ttr_01( df = test_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, earrest_01_col = earrest_01, evitals_06_col = evitals_06, evitals_07_col = evitals_07, evitals_10_col = evitals_10, evitals_12_col = evitals_12, evitals_14_col = evitals_14, evitals_23_col = evitals_23, evitals_26_col = evitals_26, transport_disposition_col = edisposition_30 ) testthat::expect_equal(sum(result$denominator), 0) })