testthat::test_that("asthma_01 produces expected results", { # Synthetic test data test_data <- tibble::tibble( erecord_01 = c("R1", "R2", "R3", "R4", "R5"), epatient_15 = c(34, 5, 45, 2, 60), # Ages epatient_16 = c("Years", "Years", "Years", "Months", "Years"), eresponse_05 = c("911 Call", "911 Call", "911 Call", "911 Call", "911 Call"), esituation_11 = c("Respiratory Distress", "Respiratory Distress", "Chest Pain", "Respiratory Distress", "Respiratory Distress"), esituation_12 = c("Asthma", "Asthma", "Not Asthma", "Asthma", "Asthma"), emedications_03 = c("Albuterol", "Albuterol", "Epinephrine", "None", "Albuterol") ) # Run function result <- asthma_01( df = test_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, esituation_11_col = esituation_11, esituation_12_col = esituation_12, emedications_03_col = emedications_03 ) # Check structure testthat::expect_s3_class(result, "data.frame") testthat::expect_true(all(c("measure", "pop", "numerator", "denominator", "prop", "prop_label") %in% names(result))) # Check calculations testthat::expect_equal(sum(result$numerator), 0) # Three cases had Albuterol testthat::expect_equal(sum(result$denominator), 0) # Four cases met inclusion criteria testthat::expect_equal(result$prop[result$pop == "All"], 0) testthat::expect_equal(nrow(result), 3) # create tables to test correct functioning patient_table <- tibble::tibble( erecord_01 = 1:3, incident_date = as.Date(c("2025-01-01", "2025-01-05", "2025-02-01")), patient_dob = as.Date(c("2000-01-01", "2020-01-01", "2023-01-01")), epatient_15 = c(25, 5, 2), epatient_16 = c("years", "years", "months") ) response_table <- tibble::tibble( erecord_01 = 1:3, eresponse_05 = c("2205001", "2205009", "2205003") ) situation_table <- tibble::tibble( erecord_01 = 1:3, esituation_11 = c("weakness", "asthma", "bronchospasm"), esituation_12 = c("asthma", "weakness", "weakness") ) medications_table <- tibble::tibble( erecord_01 = 1:3, emedications_03 = c("albuterol", "levalbuterol", "metaproterenol") ) # test the success of the function result_2 <- asthma_01(patient_scene_table = patient_table, response_table = response_table, situation_table = situation_table, medications_table = medications_table, erecord_01_col = erecord_01, incident_date_col = incident_date, patient_DOB_col = patient_dob, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, esituation_11_col = esituation_11, esituation_12_col = esituation_12, emedications_03_col = emedications_03 ) # Check calculations testthat::expect_equal(sum(result_2$numerator), 4) # Three cases had Albuterol testthat::expect_equal(sum(result_2$denominator), 4) # Four cases met inclusion criteria testthat::expect_equal(result_2$prop[result_2$pop == "All"], 1) testthat::expect_equal(nrow(result_2), 3) }) testthat::test_that("asthma_01 handles missing data correctly", { missing_data <- tibble::tibble( erecord_01 = c("R1", "R2"), epatient_15 = c(NA, 30), epatient_16 = c("Years", NA), eresponse_05 = c("911 Call", "911 Call"), esituation_11 = c("Respiratory Distress", "Respiratory Distress"), esituation_12 = c("Asthma", "Asthma"), emedications_03 = c(NA, "Albuterol") ) result <- asthma_01( df = missing_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, esituation_11_col = esituation_11, esituation_12_col = esituation_12, emedications_03_col = emedications_03 ) testthat::expect_true(nrow(result) > 0) testthat::expect_true(all(!is.na(result$denominator))) }) testthat::test_that("asthma_01 returns empty result for non-matching criteria", { non_matching_data <- tibble::tibble( erecord_01 = c("R1", "R2"), epatient_15 = c(30, 50), epatient_16 = c("Years", "Years"), eresponse_05 = c("Non-911 Call", "Non-911 Call"), esituation_11 = c("Non-Respiratory", "Non-Respiratory"), esituation_12 = c("Not Asthma", "Not Asthma"), emedications_03 = c("None", "None") ) result <- asthma_01( df = non_matching_data, erecord_01_col = erecord_01, epatient_15_col = epatient_15, epatient_16_col = epatient_16, eresponse_05_col = eresponse_05, esituation_11_col = esituation_11, esituation_12_col = esituation_12, emedications_03_col = emedications_03 ) testthat::expect_equal(sum(result$denominator), 0) })