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> #  File tests/d3_animation_tests.R in package ndtv, part of the Statnet suite
> #  of packages for network analysis, http://statnet.org .
> #
> #  This software is distributed under the GPL-3 license.  It is free,
> #  open source, and has the attribution requirements (GPL Section 7) at
> #  http://statnet.org/attribution
> #
> #  Copyright 2014 Statnet Commons
> #######################################################################
> 
> # tests for d3 animation functionality
> library(ndtv)
Loading required package: network

'network' 1.18.2 (2023-12-04), part of the Statnet Project
* 'news(package="network")' for changes since last version
* 'citation("network")' for citation information
* 'https://statnet.org' for help, support, and other information

Loading required package: networkDynamic

'networkDynamic' 0.11.4 (2023-12-10?), part of the Statnet Project
* 'news(package="networkDynamic")' for changes since last version
* 'citation("networkDynamic")' for citation information
* 'https://statnet.org' for help, support, and other information

Loading required package: animation
Loading required package: sna
Loading required package: statnet.common

Attaching package: 'statnet.common'

The following objects are masked from 'package:base':

    attr, order

sna: Tools for Social Network Analysis
Version 2.7-2 created on 2023-12-05.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.


'ndtv' 0.13.4 (2023-06-30), part of the Statnet Project
* 'news(package="ndtv")' for changes since last version
* 'citation("ndtv")' for citation information
* 'https://statnet.org' for help, support, and other information

> require(testthat)
Loading required package: testthat
> 
> # flip this to true if you actually want it to open a gajillion browser windows
> showInBrowser=FALSE
> 
> # create really trivial network for testing
> test<-network.initialize(3)
> activate.vertices(test,v=1,onset=1,terminus=3)
> activate.vertices(test,v=3:3,onset=0,terminus=5)
> add.edges.active(test,tail=2,head=3,onset=1,terminus=5)
> 
> # test output formats
> render.d3movie(test,filename=tempfile(fileext = '.html'),launchBrowser = showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec6136139a.html
> render.d3movie(test,filename=tempfile(fileext = '.json'),output.mode='JSON')
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation JSON representation to D:\temp\RtmpErIfhV\file132ec14205f2d.json
> 
> # test browser launch
> render.d3movie(test,filename=tempfile(fileext = '.json'),output.mode='JSON',launchBrowser = showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation JSON representation to D:\temp\RtmpErIfhV\file132ec1d203726.json
> 
> # test xlab
> render.d3movie(test,filename=tempfile(fileext = '.html'),xlab='hello, xlabel',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec19e319f1.html
> 
> # test main
> render.d3movie(test,filename=tempfile(fileext = '.html'),main='hello, main',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec30ed36b6.html
> 
> # test displaylabels
> render.d3movie(test,filename=tempfile(fileext = '.html'),displaylabels=FALSE,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec54937f02.html
> 
> # test use arrows
> render.d3movie(test,filename=tempfile(fileext = '.html'),usearrows=FALSE,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec7e932277.html
> 
> # test bg
> render.d3movie(test,filename=tempfile(fileext = '.html'),bg='red',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec31792d17.html
> 
> # test vertex.cex
> render.d3movie(test,filename=tempfile(fileext = '.html'),vertex.cex=5,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec363d4f6.html
> 
> # test vertex label
> render.d3movie(test,filename=tempfile(fileext = '.html'),label="we all have the same label",launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec7fbc2a4a.html
> 
> # test label cex
> render.d3movie(test,filename=tempfile(fileext = '.html'),label.cex=c(0.5,2,4),launchBrowser=showInBrowser,displaylabels=TRUE)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec2af27536.html
> 
> # test vertex label color
> render.d3movie(test,filename=tempfile(fileext = '.html'),label.col='red',launchBrowser=showInBrowser,displaylabels=TRUE)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132eca2726c9.html
> 
> # test vertex color
> render.d3movie(test,filename=tempfile(fileext = 'html'),vertex.col='blue',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec5a71f00html
> 
> # test vertex sides
> render.d3movie(test,filename=tempfile(fileext = 'html'),vertex.sides=3,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec7e2d57cehtml
> 
> # vertex rotation
> render.d3movie(test,filename=tempfile(fileext = 'html'),vertex.sides=3,vertex.rot=c(0,90,180),launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec2c60457ahtml
> 
> # vertex border color
> render.d3movie(test,filename=tempfile(fileext = 'html'),vertex.border='green',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec442a7ed1html
> 
> # vertex border width
> render.d3movie(test,filename=tempfile(fileext = 'html'),vertex.lwd=5,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec2ca643fbhtml
> 
> # test edge color
> render.d3movie(test,filename=tempfile(fileext = 'html'),edge.col='blue',launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec2cec70fchtml
> 
> # test edge width
> render.d3movie(test,filename=tempfile(fileext = 'html'),edge.lwd=10,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec4516511ehtml
> 
> # test transparent edge color
> render.d3movie(test,filename=tempfile(fileext = 'html'),edge.col='#CCCCCC22',edge.lwd=10,launchBrowser=showInBrowser)
No slice.par found, using
slice parameters:
  start:0
  end:5
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
Calculating layout for network slice from time  5 to 6
caching 10 properties for slice 0
caching 10 properties for slice 1
caching 10 properties for slice 2
caching 10 properties for slice 3
caching 10 properties for slice 4
caching 10 properties for slice 5
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec187232dfhtml
> 
> 
> # test static network
> testStatic<-network.initialize(4)
> testStatic[1,2:3]<-1
> render.d3movie(testStatic)
input network is not networkDynamic object and does not have temporal info so output animation controls disabled by default
Calculating layout for network slice from time  0 to 0
caching 10 properties for slice 0
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec3a4d6815.html
browser launching disabled because R is not in interactive mode
> 
> # test passing in coord to static network
> testStatic<-network.initialize(4)
> testStatic[1,2:3]<-1
> render.d3movie(testStatic,coord=matrix(1:8,ncol=2))
input network is not networkDynamic object and does not have temporal info so output animation controls disabled by default
caching 10 properties for slice 0
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec79f37c65.html
browser launching disabled because R is not in interactive mode
> 
> # test rendering network of size zero (issue #24)
> test<-network.initialize(0)
> activate.vertices(test)
> activate.vertex.attribute(test,'foo',1,onset=0,terminus=1)
> render.d3movie(test,vertex.cex='foo')
No slice.par found, using
slice parameters:
  start:0
  end:0
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
caching 10 properties for slice 0
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec6fdd7c40.html
browser launching disabled because R is not in interactive mode
There were 13 warnings (use warnings() to see them)
> 
> # test rendering of edge attribute for network with edge not active # 25
> test<-network.initialize(2)
> add.edges.active(test,1,2,onset=0,terminus=2)
> activate.edge.attribute(test,'weight',1, onset=0,terminus=2)
> compute.animation(test,slice.par = list(start=3,end=4,interval=1,aggregate.dur=1,rule='earliest'))
Calculating layout for network slice from time  3 to 4
Calculating layout for network slice from time  4 to 5
> render.d3movie(test,edge.lwd='weight')
caching 10 properties for slice 0
caching 10 properties for slice 1
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec5d233906.html
browser launching disabled because R is not in interactive mode
> 
> # test rendering of edge attribute for network with attribute not active
> # (should give error because do 'default' attribute is defined)
> test<-network.initialize(2)
> add.edges.active(test,1,2,onset=0,terminus=2)
> activate.edge.attribute(test,'weight',1, onset=1,terminus=2)
> expect_error( render.d3movie(test,edge.lwd='weight'),regexp = 'had illegal missing values for')
No slice.par found, using
slice parameters:
  start:0
  end:2
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
Calculating layout for network slice from time  2 to 3
caching 10 properties for slice 0
> 
> #errors on empty slice with vertex.cex specified
> #https://github.com/statnet/ndtv/issues/24
> test<-network.initialize(2)
> add.edges.active(test,1,2,onset=0,terminus=1)
> activate.edge.attribute(test,'edge.col','blue',onset = 0,terminus=1)
> render.d3movie(test,edge.col='edge.col')
No slice.par found, using
slice parameters:
  start:0
  end:1
  interval:1
  aggregate.dur:1
  rule:latest

Calculating layout for network slice from time  0 to 1
Calculating layout for network slice from time  1 to 2
caching 10 properties for slice 0
caching 10 properties for slice 1
wrote animation HTML file to D:\temp\RtmpErIfhV\file132ec37ab1afe.html
browser launching disabled because R is not in interactive mode
> 
> 
> 
> 
> proc.time()
   user  system elapsed 
   3.28    0.26    3.54