downloading reverse dependencies ... downloading AteMeVs_0.1.0.tar.gz ... ok downloading biglasso_1.6.0.tar.gz ... ok downloading FarmSelect_1.0.2.tar.gz ... ok downloading fastTS_1.0.1.tar.gz ... ok downloading glmmPen_1.5.4.8.tar.gz ... ok downloading glmvsd_1.5.tar.gz ... ok downloading HCTR_0.1.1.tar.gz ... ok downloading hdmed_1.0.1.tar.gz ... ok downloading hdnom_6.0.3.tar.gz ... ok downloading HIMA_2.2.2.tar.gz ... ok downloading HSDiC_0.1.tar.gz ... ok downloading L2E_2.0.tar.gz ... ok downloading mcb_0.1.15.tar.gz ... ok downloading mombf_3.5.4.tar.gz ... ok downloading mrMLM_5.0.1.tar.gz ... ok downloading mrMLM.GUI_4.0.2.tar.gz ... ok downloading msaenet_3.1.2.tar.gz ... ok downloading naivereg_1.0.5.tar.gz ... ok downloading nonprobsvy_0.1.0.tar.gz ... ok downloading PDMIF_0.1.0.tar.gz ... ok downloading polywog_0.4-1.tar.gz ... ok downloading RCTS_0.2.4.tar.gz ... ok downloading simode_1.2.2.tar.gz ... ok downloading SIS_0.8-8.tar.gz ... ok downloading SOIL_1.1.tar.gz ... ok downloading sparseR_0.3.1.tar.gz ... ok downloading sparsevar_0.1.0.tar.gz ... ok downloading SPSP_0.2.0.tar.gz ... ok downloading srlTS_0.1.1.tar.gz ... ok downloading stabiliser_1.0.6.tar.gz ... ok downloading eclust_0.1.0.tar.gz ... ok downloading qeML_1.1.tar.gz ... ok installing dependencies ‘ashr’, ‘autoimage’, ‘bama’, ‘bigstep’, ‘cdparcoord’, ‘conquer’, ‘deepnet’, ‘expss’, ‘flare’, ‘FOCI’, ‘freebird’, ‘gcdnet’, ‘genlasso’, ‘harmonicmeanp’, ‘HDMT’, ‘JOUSBoost’, ‘mrMLM’, ‘ncvreg’, ‘partools’, ‘picasso’, ‘polyreg’, ‘protoclust’, ‘regtools’, ‘sbl’, ‘smoothmest’, ‘toweranNA’, ‘tsqn’ also installing the dependencies ‘etrunct’, ‘FMStable’, ‘maditr’, ‘freqparcoord’ begin installing package ‘etrunct’ begin installing package ‘FMStable’ begin installing package ‘maditr’ begin installing package ‘freqparcoord’ begin installing package ‘bama’ begin installing package ‘freebird’ begin installing package ‘genlasso’ begin installing package ‘gcdnet’ begin installing package ‘HDMT’ begin installing package ‘conquer’ begin installing package ‘smoothmest’ begin installing package ‘sbl’ begin installing package ‘flare’ begin installing package ‘tsqn’ begin installing package ‘picasso’ begin installing package ‘bigstep’ begin installing package ‘protoclust’ begin installing package ‘FOCI’ begin installing package ‘JOUSBoost’ begin installing package ‘polyreg’ begin installing package ‘autoimage’ begin installing package ‘deepnet’ begin installing package ‘ncvreg’ * installing *source* package ‘etrunct’ ... ** package ‘etrunct’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (etrunct) begin installing package ‘ashr’ * installing *source* package ‘sbl’ ... ** package ‘sbl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sbl) * installing *source* package ‘deepnet’ ... ** package ‘deepnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deepnet) * installing *source* package ‘smoothmest’ ... ** package ‘smoothmest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smoothmest) * installing *source* package ‘tsqn’ ... ** package ‘tsqn’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tsqn) * installing *source* package ‘protoclust’ ... ** package ‘protoclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpna7zei/R.INSTALL343f441826988a/protoclust/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hier.c -o hier.o hier.c: In function ‘hier’: hier.c:194:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 194 | for(j = 0; j < imerge; j++) | ^~~ hier.c:204:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 204 | ii = lt(imerge+1,imerge,n); | ^~ hier.c: In function ‘minimaxpoint’: hier.c:442:10: warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized] 442 | return mm; | ^~ hier.c:428:7: note: ‘mm’ was declared here 428 | int mm; | ^~ hier.c: In function ‘findNN’: hier.c:346:29: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 346 | mincomplete = completelink(dmax, n, clusters[nn], nn, clusters[i], i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hier.c:328:7: note: ‘nn’ was declared here 328 | int nn; | ^~ hier.c: In function ‘hier’: hier.c:274:26: warning: ‘imerge’ may be used uninitialized [-Wmaybe-uninitialized] 274 | Cluster *cur = clusters[imerge]; | ^ hier.c:28:20: note: ‘imerge’ was declared here 28 | int i, j, k, ii, imerge, jmerge, reverse; | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c protoclust_init.c -o protoclust_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o protoclust.so hier.o protoclust_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpna7zei/R.INSTALL343f441826988a/protoclust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-protoclust/00new/protoclust/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protoclust) * installing *source* package ‘FOCI’ ... ** package ‘FOCI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FOCI) * installing *source* package ‘polyreg’ ... ** package ‘polyreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polyreg) begin installing package ‘regtools’ * installing *source* package ‘FMStable’ ... ** package ‘FMStable’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH44NPN/R.INSTALL343f1c74b8c1e9/FMStable/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FMStable.c -o FMStable.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o FMStable.so FMStable.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH44NPN/R.INSTALL343f1c74b8c1e9/FMStable/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FMStable/00new/FMStable/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FMStable) begin installing package ‘harmonicmeanp’ * installing *source* package ‘maditr’ ... ** package ‘maditr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maditr) begin installing package ‘expss’ * installing *source* package ‘autoimage’ ... ** package ‘autoimage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autoimage) * installing *source* package ‘freqparcoord’ ... ** package ‘freqparcoord’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freqparcoord) * installing *source* package ‘harmonicmeanp’ ... ** package ‘harmonicmeanp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (harmonicmeanp) * installing *source* package ‘HDMT’ ... ** package ‘HDMT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDMT) * installing *source* package ‘ncvreg’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpa1RatV/R.INSTALL343f4e29b1554/ncvreg/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cox-dh.c -o cox-dh.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussian.c -o gaussian.o gaussian.c: In function ‘cdfit_gaussian’: gaussian.c:118:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized] 118 | for (int j=0; j
(cutoff * alpha * m[j])) e2[j] = 1; | ~~~~~~~^~~~~~~ gaussian.c:76:10: note: ‘cutoff’ was declared here 76 | double cutoff, l1, l2; | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm.c -o glm.o glm.c: In function ‘cdfit_glm’: glm.c:152:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized] 152 | for (int j=0; j
(cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
glm.c:91:42: note: ‘cutoff’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~~~~~
glm.c:200:24: warning: ‘si’ may be used uninitialized [-Wmaybe-uninitialized]
200 | max_change = fabs(si)*xwx/n;
| ^~~~~~~~
glm.c:91:65: note: ‘si’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxprod.c -o maxprod.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_binomial.c -o mfdr_binomial.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_cox.c -o mfdr_cox.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_gaussian.c -o mfdr_gaussian.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ncvreg_init.c -o ncvreg_init.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rawfit_gaussian.c -o rawfit_gaussian.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardize.c -o standardize.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpa1RatV/R.INSTALL343f4e29b1554/ncvreg/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ncvreg/00new/ncvreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncvreg)
begin installing package ‘mrMLM’
* installing *source* package ‘bigstep’ ...
** package ‘bigstep’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigstep)
* installing *source* package ‘freebird’ ...
** package ‘freebird’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQqRuGo/R.INSTALL343f215a7cc251/freebird/src'
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o
mymath.c: In function ‘max_fabs_vc’:
mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable]
141 | int i,cnt;
| ^~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o
slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’:
slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable]
261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2;
| ^~~~~
slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’:
slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
411 | double T,T1,rho,zero,eps,eps1,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable]
410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1;
| ^~~~~
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o freebird.so euc_proj.o init.o mymath.o slim_dantzig_ladm_scr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQqRuGo/R.INSTALL343f215a7cc251/freebird/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-freebird/00new/freebird/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (freebird)
* installing *source* package ‘gcdnet’ ...
** package ‘gcdnet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTpNJop/R.INSTALL343f2b1c85f36d/gcdnet/src'
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c auxiliary.f90 -o auxiliary.o
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c erlassoNET.f90 -o erlassoNET.o
erlassoNET.f90:264:24:
264 | al = al * alf
| ^
Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized]
erlassoNET.f90:217:24:
217 | DOUBLE PRECISION :: al
| ^
note: ‘al’ was declared here
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c hsvmlassoNET.f90 -o hsvmlassoNET.o
hsvmlassoNET.f90:262:24:
262 | al = al * alf
| ^
Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized]
hsvmlassoNET.f90:216:24:
216 | DOUBLE PRECISION :: al
| ^
note: ‘al’ was declared here
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c loglassoNET.f90 -o loglassoNET.o
loglassoNET.f90:257:24:
257 | al = al * alf
| ^
Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized]
loglassoNET.f90:213:24:
213 | DOUBLE PRECISION :: al
| ^
note: ‘al’ was declared here
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c lslassoNET.f90 -o lslassoNET.o
lslassoNET.f90:256:24:
256 | al = al * alf
| ^
Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized]
lslassoNET.f90:212:24:
212 | DOUBLE PRECISION :: al
| ^
note: ‘al’ was declared here
gfortran-14 -fpic -g -O2 -Wall -mtune=native -c sqsvmlassoNET.f90 -o sqsvmlassoNET.o
sqsvmlassoNET.f90:258:24:
258 | al = al * alf
| ^
Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized]
sqsvmlassoNET.f90:213:24:
213 | DOUBLE PRECISION :: al
| ^
note: ‘al’ was declared here
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o gcdnet.so auxiliary.o erlassoNET.o hsvmlassoNET.o init.o loglassoNET.o lslassoNET.o sqsvmlassoNET.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTpNJop/R.INSTALL343f2b1c85f36d/gcdnet/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gcdnet/00new/gcdnet/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gcdnet)
* installing *source* package ‘JOUSBoost’ ...
** package ‘JOUSBoost’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplYmTes/R.INSTALL343f476855fc9b/JOUSBoost/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid_probs.cpp -o grid_probs.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o JOUSBoost.so RcppExports.o grid_probs.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplYmTes/R.INSTALL343f476855fc9b/JOUSBoost/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JOUSBoost/00new/JOUSBoost/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (JOUSBoost)
* installing *source* package ‘genlasso’ ...
** package ‘genlasso’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZL1nG2/R.INSTALL343f301e5b406a/genlasso/src'
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrixcomps.c -o matrixcomps.o
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o genlasso.so init.o matrixcomps.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZL1nG2/R.INSTALL343f301e5b406a/genlasso/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-genlasso/00new/genlasso/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genlasso)
* installing *source* package ‘flare’ ...
** package ‘flare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiY56ch/R.INSTALL343f414ec0868c/flare/src'
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFGen.c -o SFGen.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o
mymath.c: In function ‘max_fabs_vc’:
mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable]
141 | int i,cnt;
| ^~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o
slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’:
slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable]
261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2;
| ^~~~~
slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’:
slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
411 | double T,T1,rho,zero,eps,eps1,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable]
410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1;
| ^~~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o
slim_lad_ladm_scr_btr.c: In function ‘slim_lad_ladm_scr_btr’:
slim_lad_ladm_scr_btr.c:236:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
236 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o
slim_lasso_ladm_scr.c: In function ‘lasso_ladm_scr’:
slim_lasso_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT;
| ^~~~
slim_lasso_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT;
| ^~~~~
slim_lasso_ladm_scr.c: In function ‘slim_lasso_ladm_scr’:
slim_lasso_ladm_scr.c:183:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
183 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o
slim_lq_ladm_scr_btr.c: In function ‘slim_lq_ladm_scr_btr’:
slim_lq_ladm_scr_btr.c:242:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
242 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb,qrtn;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o
slim_sqrt_ladm_scr.c: In function ‘sqrt_ladm_scr’:
slim_sqrt_ladm_scr.c:12:92: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT;
| ^~~~
slim_sqrt_ladm_scr.c:12:86: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT;
| ^~~~~
slim_sqrt_ladm_scr.c: In function ‘slim_sqrt_ladm_scr’:
slim_sqrt_ladm_scr.c:285:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
285 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slimh.c -o slimh.o
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o
sugm_clime_ladm_scr.c: In function ‘sugm_clime_ladm_scr’:
sugm_clime_ladm_scr.c:11:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
11 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o
sugm_tiger_ladm_scr.c: In function ‘tiger_lasso_ladm_scr’:
sugm_tiger_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp;
| ^~~~
sugm_tiger_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp;
| ^~~~~
sugm_tiger_ladm_scr.c: In function ‘sugm_tiger_ladm_scr’:
sugm_tiger_ladm_scr.c:205:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable]
205 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb,tau0;
| ^~~~
gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiY56ch/R.INSTALL343f414ec0868c/flare/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-flare/00new/flare/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flare)
* installing *source* package ‘picasso’ ...
** package ‘picasso’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpguMTiq/R.INSTALL343f387132fd8c/picasso/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I./include -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c picasso_R.cpp -o picasso_R.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I./include -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c picasso-all0.cpp -o picasso-all0.o
In file included from ./include/eigen3/Eigen/Core:392,
from ./include/eigen3/Eigen/Dense:1,
from ./include/picasso/objective.hpp:5,
from ./include/../src/objective/gaussian_naive_update.cpp:2,
from picasso-all0.cpp:2:
./include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
60 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
./include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
./include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
./include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
161 | template<> struct unpacket_traits