context("attributes") f <- system.file("extdata", "S2008001.L3m_DAY_CHL_chlor_a_9km.nc", package = "ncmeta") u <- "https://upwell.pfeg.noaa.gov/erddap/tabledap/FRDCPSTrawlLHHaulCatch" test_that("attributes works", { testthat::skip_on_cran() met <- nc_meta(f) da <- nc_atts(f) %>% expect_s3_class("tbl_df") %>% expect_named(c("id", "name", "variable", "value")) expect_that(nrow(da), equals(87L)) expect_that(da$value, is_a("list")) da <- nc_atts(f, add_names = TRUE) %>% expect_s3_class("tbl_df") %>% expect_named(c("id", "name", "variable", "value")) }) test_that("attributes from Thredds works", { context("avoiding thredds tests for RNetCDF") skip_on_cran() # ## skip() ## github can't do this atm 2022-08-15 # du <- try(nc_atts(u)) # if (!inherits(du, "try-error")) { # du %>% expect_s3_class("tbl_df") %>% # expect_named(c("id", "name", "variable", "value")) # # expect_that(nrow(du), equals(119L)) ## became 124 rows in 2022 August # expect_that(du$value, is_a("list")) # } }) test_that("individual attribute inquiry works", { testthat::skip_on_cran() nc_att(f, 0, 0) %>% expect_s3_class("tbl_df") %>% expect_named(c("id", "name", "variable", "value")) a3 <- nc_att(f, 0, 3) expect_that(a3$id, equals(3.0)) expect_that(a3$name, equals("_FillValue")) chk <- list(`_FillValue` = -32767) expect_that(a3$value, equals(chk)) expect_identical(a3, nc_att(f, 0, "_FillValue")) }) l3binfile <- system.file("extdata", "S2008001.L3b_DAY_CHL.nc", package = "ncmeta") test_that("failure is graceful", { expect_warning(abin <- nc_atts(l3binfile), "no variables recognizable") abin %>% expect_s3_class("tbl_df") %>% expect_named(c("id", "name", "variable", "value")) expect_that(nrow(abin), equals(49L)) expect_that(abin$variable, equals(rep("NC_GLOBAL",49L))) expect_that(abin$name, equals(c("product_name", "title", "instrument", "platform", "temporal_range", "start_orbit_number", "end_orbit_number", "date_created", "processing_version", "history", "time_coverage_start", "time_coverage_end", "northernmost_latitude", "southernmost_latitude", "easternmost_longitude", "westernmost_longitude", "geospatial_lat_max", "geospatial_lat_min", "geospatial_lon_max", "geospatial_lon_min", "geospatial_lat_units", "geospatial_lon_units", "geospatial_lon_resolution", "geospatial_lat_resolution", "spatialResolution", "data_bins", "percent_data_bins", "units", "binning_scheme", "project", "institution", "standard_name_vocabulary", "Metadata_Conventions", "Conventions", "naming_authority", "id", "license", "creator_name", "publisher_name", "creator_email", "publisher_email", "creator_url", "publisher_url", "processing_level", "cdm_data_type", "identifier_product_doi_authority", "identifier_product_doi", "keywords", "keywords_vocabulary"))) expect_that(unique(abin$id), equals(-1)) }) test_that("nc_atts works", { ## https://github.com/hypertidy/ncmeta/issues/36 f <- system.file("extdata", "S2008001.L3m_DAY_CHL_chlor_a_9km.nc", package = "ncmeta") expect_equal(nc_atts(f, "NC_GLOBAL")$variable, rep("NC_GLOBAL", 65)) expect_equal(nrow(nc_atts(f)), 87) expect_equal(nrow(nc_atts(f, "chlor_a")), 12) expect_equal(nrow(nc_atts(f, "lon")), 5) })