* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ncmR.Rcheck’ * using R Under development (unstable) (2026-03-31 r89756) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.8 (3+b1) Debian flang version 21.1.8 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * current time: 2026-04-01 03:29:06 UTC * checking for file ‘ncmR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ncmR’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/3s] NOTE Maintainer: ‘Yuxuan He ’ New submission Possibly misspelled words in DESCRIPTION: Microbiome (3:39) NCM (9:70) al (11:42) et (11:39) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ncmR’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] WARNING Error: package or namespace load failed for ‘ncmR’: .onAttach failed in attachNamespace() for 'ncmR', details: call: packageVersion(pkgname) error: could not find function "packageVersion" Execution halted It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. * checking whether the package can be unloaded cleanly ... [0s/0s] WARNING Error: package or namespace load failed for ‘ncmR’: .onAttach failed in attachNamespace() for 'ncmR', details: call: packageVersion(pkgname) error: could not find function "packageVersion" Execution halted * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE .onAttach: no visible global function definition for ‘packageVersion’ Undefined global functions or variables: packageVersion Consider adding importFrom("utils", "packageVersion") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [10s/10s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_ncm 9.787 0.144 9.936 * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 WARNINGs, 3 NOTEs