downloading reverse dependencies ‘slurm’, ‘atime’, ‘aum’, ‘mlr3resampling’ trying URL 'file:///data/Repositories/CRAN/src/contrib/slurm_2025.4.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/atime_2025.9.30.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/aum_2024.6.19.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3resampling_2025.11.19.tar.gz' installing dependencies ‘animint2’, ‘atime’, ‘binsegRcpp’, ‘cdata’, ‘fastymd’, ‘fpop’, ‘grates’, ‘LOPART’, ‘mlr3misc’, ‘mlr3torch’, ‘nc’, ‘pbdMPI’, ‘PeakSegDisk’, ‘penaltyLearning’, ‘re2’, ‘wbs’, ‘WeightedROC’ also installing the dependencies ‘rquery’, ‘rqdatatable’ begin installing package ‘rquery’ begin installing package ‘re2’ begin installing package ‘binsegRcpp’ begin installing package ‘nc’ begin installing package ‘fastymd’ begin installing package ‘wbs’ begin installing package ‘fpop’ begin installing package ‘LOPART’ begin installing package ‘PeakSegDisk’ begin installing package ‘WeightedROC’ begin installing package ‘penaltyLearning’ begin installing package ‘atime’ begin installing package ‘pbdMPI’ begin installing package ‘animint2’ begin installing package ‘mlr3misc’ * installing *source* package ‘WeightedROC’ ... ** this is package ‘WeightedROC’ version ‘2020.1.31’ ** package ‘WeightedROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WeightedROC) * installing *source* package ‘fastymd’ ... ** this is package ‘fastymd’ version ‘0.1.4’ ** package ‘fastymd’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuWXUlw/R.INSTALL66a7244b617d0/fastymd/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api.c -o api.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c civil_from_days.c -o civil_from_days.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c days_from_civil.c -o days_from_civil.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c epochdays.c -o epochdays.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastymd.so api.o civil_from_days.o days_from_civil.o epochdays.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuWXUlw/R.INSTALL66a7244b617d0/fastymd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastymd/00new/fastymd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastymd) begin installing package ‘grates’ * installing *source* package ‘wbs’ ... ** this is package ‘wbs’ version ‘1.4.1’ ** package ‘wbs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAhekj3/R.INSTALL66a7c5088be56/wbs/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wbs.c -o wbs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wbs_init.c -o wbs_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o wbs.so wbs.o wbs_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAhekj3/R.INSTALL66a7c5088be56/wbs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-wbs/00new/wbs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wbs) * installing *source* package ‘nc’ ... ** this is package ‘nc’ version ‘2026.2.20’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nc) * installing *source* package ‘atime’ ... ** this is package ‘atime’ version ‘2025.9.30’ ** package ‘atime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (atime) * installing *source* package ‘PeakSegDisk’ ... ** this is package ‘PeakSegDisk’ version ‘2024.10.1’ ** package ‘PeakSegDisk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpahincg/R.INSTALL66a7e7d5b5c36/PeakSegDisk/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PeakSegFPOPLog.cpp -o PeakSegFPOPLog.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c funPieceListLog.cpp -o funPieceListLog.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PeakSegDisk.so PeakSegFPOPLog.o funPieceListLog.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpahincg/R.INSTALL66a7e7d5b5c36/PeakSegDisk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PeakSegDisk/00new/PeakSegDisk/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PeakSegDisk) * installing *source* package ‘grates’ ... ** this is package ‘grates’ version ‘1.7.1’ ** package ‘grates’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grates) * installing *source* package ‘mlr3misc’ ... ** this is package ‘mlr3misc’ version ‘0.21.0’ ** package ‘mlr3misc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmE6D9z/R.INSTALL66a8b4820b703/mlr3misc/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count_missing.c -o count_missing.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keep_in_bounds.c -o keep_in_bounds.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c to_decimal.c -o to_decimal.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c which_max.c -o which_max.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mlr3misc.so count_missing.o init.o keep_in_bounds.o to_decimal.o which_max.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmE6D9z/R.INSTALL66a8b4820b703/mlr3misc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlr3misc/00new/mlr3misc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3misc) begin installing package ‘mlr3torch’ * installing *source* package ‘fpop’ ... ** this is package ‘fpop’ version ‘2019.08.26’ ** package ‘fpop’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3hrFM8/R.INSTALL66a8165f817b0/fpop/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BinSeg_MultiDim.cpp -o BinSeg_MultiDim.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Call_BinSeg_MultiDim.cpp -o Call_BinSeg_MultiDim.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Heap.cpp -o Heap.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Node.cpp -o Node.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rwrappers.cc -o Rwrappers.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c colibri.cc -o colibri.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c liste.cc -o liste.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fpop.so BinSeg_MultiDim.o Call_BinSeg_MultiDim.o Heap.o Node.o Rwrappers.o colibri.o liste.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3hrFM8/R.INSTALL66a8165f817b0/fpop/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fpop/00new/fpop/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fpop) * installing *source* package ‘penaltyLearning’ ... ** this is package ‘penaltyLearning’ version ‘2024.9.3’ ** package ‘penaltyLearning’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaXq4Ak/R.INSTALL66a8535e39933/penaltyLearning/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c largestContinuousMinimum.cpp -o largestContinuousMinimum.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modelSelection.cpp -o modelSelection.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modelSelectionFwd.cpp -o modelSelectionFwd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modelSelectionQuadratic.cpp -o modelSelectionQuadratic.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o penaltyLearning.so interface.o largestContinuousMinimum.o modelSelection.o modelSelectionFwd.o modelSelectionQuadratic.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaXq4Ak/R.INSTALL66a8535e39933/penaltyLearning/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-penaltyLearning/00new/penaltyLearning/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (penaltyLearning) * installing *source* package ‘rquery’ ... ** this is package ‘rquery’ version ‘1.4.99’ ** package ‘rquery’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rquery) begin installing package ‘rqdatatable’ * installing *source* package ‘rqdatatable’ ... ** this is package ‘rqdatatable’ version ‘1.3.3’ ** package ‘rqdatatable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rqdatatable) begin installing package ‘cdata’ * installing *source* package ‘LOPART’ ... ** this is package ‘LOPART’ version ‘2024.6.19’ ** package ‘LOPART’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHc9lyB/R.INSTALL66a752c1ecbc2/LOPART/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LOPART.cpp -o LOPART.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o LOPART.so LOPART.o RcppExports.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHc9lyB/R.INSTALL66a752c1ecbc2/LOPART/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LOPART/00new/LOPART/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LOPART) * installing *source* package ‘pbdMPI’ ... ** this is package ‘pbdMPI’ version ‘0.5-4’ ** package ‘pbdMPI’ successfully unpacked and MD5 sums checked ** using staged installation checking for sed... /usr/bin/sed checking for mpicc... mpicc checking for ompi_info... ompi_info checking for pkg-config... /usr/bin/pkg-config Try sed, mpicc, and ompi_info ... >> TMP_INC_DIRS = /usr/lib/x86_64-linux-gnu/openmpi/include /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi Checking /usr/lib/x86_64-linux-gnu/openmpi/include ... Found /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h ... >> TMP_LIB_DIRS = /usr/lib/x86_64-linux-gnu/openmpi/lib Checking /usr/lib/x86_64-linux-gnu/openmpi/lib ... Found /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ... Found mpi.h and libmpi.so ... via mpicc --showme >> TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include >> TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib >> TMP_FOUND = mpicc --showme checking for openpty in -lutil... yes checking for main in -lpthread... yes ./configure: line 4738: module: command not found ******************* Results of pbdMPI package configure ***************** >> MPIRUN = /usr/bin/mpirun >> MPIEXEC = /usr/bin/mpiexec >> ORTERUN = >> TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include >> TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib >> TMP_LIBNAME = libmpi.so >> TMP_FOUND = mpicc --showme >> MPI_ROOT = >> MPITYPE = OPENMPI >> MPI_INCLUDE_PATH = /usr/lib/x86_64-linux-gnu/openmpi/include >> MPI_LIBPATH = /usr/lib/x86_64-linux-gnu/openmpi/lib >> MPI_LIBNAME = libmpi.so >> MPI_LIBS = -lutil -lpthread >> MPI_DEFS = -DMPI2 >> MPI_INCL2 = >> MPI_LDFLAGS = >> PKG_CPPFLAGS = -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI >> PKG_LIBS = -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread >> PROF_LDFLAGS = >> ENABLE_LD_LIBRARY_PATH = no ************************************************************************* configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.r config.status: creating R/util_execmpi.r ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ4bapd/R.INSTALL66a8a375ba5e5/pbdMPI/src' echo "MPIRUN = /usr/bin/mpirun" > Makeconf echo "MPIEXEC = /usr/bin/mpiexec" >> Makeconf echo "ORTERUN = " >> Makeconf echo "TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include" >> Makeconf echo "TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib" >> Makeconf echo "TMP_LIBNAME = libmpi.so" >> Makeconf echo "TMP_FOUND = mpicc --showme" >> Makeconf echo "MPI_ROOT = " >> Makeconf echo "MPITYPE = OPENMPI" >> Makeconf echo "MPI_INCLUDE_PATH = /usr/lib/x86_64-linux-gnu/openmpi/include" >> Makeconf echo "MPI_LIBPATH = /usr/lib/x86_64-linux-gnu/openmpi/lib" >> Makeconf echo "MPI_LIBNAME = libmpi.so" >> Makeconf echo "MPI_LIBS = -lutil -lpthread" >> Makeconf echo "MPI_DEFS = -DMPI2" >> Makeconf echo "MPI_INCL2 = " >> Makeconf echo "MPI_LDFLAGS = " >> Makeconf echo "PKG_CPPFLAGS = -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI" >> Makeconf echo "PKG_LIBS = -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread" >> Makeconf echo "PROF_LDFLAGS = " >> Makeconf echo "ENABLE_LD_LIBRARY_PATH = no" >> Makeconf gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_errors.c -o comm_errors.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_sort_double.c -o comm_sort_double.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_sort_integer.c -o comm_sort_integer.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkg_dl.c -o pkg_dl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkg_tools.c -o pkg_tools.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd.c -o spmd.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allgather.c -o spmd_allgather.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allgatherv.c -o spmd_allgatherv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allreduce.c -o spmd_allreduce.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_alltoall.c -o spmd_alltoall.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_alltoallv.c -o spmd_alltoallv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_bcast.c -o spmd_bcast.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_communicator.c -o spmd_communicator.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_communicator_spawn.c -o spmd_communicator_spawn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_gather.c -o spmd_gather.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_gatherv.c -o spmd_gatherv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_info.c -o spmd_info.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_recv.c -o spmd_recv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_reduce.c -o spmd_reduce.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_scatter.c -o spmd_scatter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_scatterv.c -o spmd_scatterv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_send.c -o spmd_send.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_sendrecv.c -o spmd_sendrecv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_sendrecv_replace.c -o spmd_sendrecv_replace.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_tool.c -o spmd_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_utility.c -o spmd_utility.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_wait.c -o spmd_wait.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pbdMPI.so comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ4bapd/R.INSTALL66a8a375ba5e5/pbdMPI/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdMPI/00new/pbdMPI ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdMPI) * installing *source* package ‘cdata’ ... ** this is package ‘cdata’ version ‘1.2.1’ ** package ‘cdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cdata) * installing *source* package ‘animint2’ ... ** this is package ‘animint2’ version ‘2025.10.17’ ** package ‘animint2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (animint2) * installing *source* package ‘binsegRcpp’ ... ** this is package ‘binsegRcpp’ version ‘2025.5.13’ ** package ‘binsegRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppV9d4W/R.INSTALL66a6c16370a88/binsegRcpp/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PiecewiseFunction.cpp -o PiecewiseFunction.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c binseg.cpp -o binseg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cum_median.cpp -o cum_median.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c depth_first.cpp -o depth_first.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o binsegRcpp.so PiecewiseFunction.o RcppExports.o binseg.o cum_median.o depth_first.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppV9d4W/R.INSTALL66a6c16370a88/binsegRcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-binsegRcpp/00new/binsegRcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (binsegRcpp) * installing *source* package ‘mlr3torch’ ... ** this is package ‘mlr3torch’ version ‘0.3.3’ ** package ‘mlr3torch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3torch) * installing *source* package ‘re2’ ... ** this is package ‘re2’ version ‘0.1.4’ ** package ‘re2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7ErrDS/R.INSTALL66a676523c25e/re2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/util/rune.cc -o re2google/util/rune.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/util/strutil.cc -o re2google/util/strutil.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/bitstate.cc -o re2google/re2/bitstate.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/compile.cc -o re2google/re2/compile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/dfa.cc -o re2google/re2/dfa.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/filtered_re2.cc -o re2google/re2/filtered_re2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/mimics_pcre.cc -o re2google/re2/mimics_pcre.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/nfa.cc -o re2google/re2/nfa.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/onepass.cc -o re2google/re2/onepass.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/parse.cc -o re2google/re2/parse.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/perl_groups.cc -o re2google/re2/perl_groups.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prefilter.cc -o re2google/re2/prefilter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prefilter_tree.cc -o re2google/re2/prefilter_tree.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prog.cc -o re2google/re2/prog.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/re2.cc -o re2google/re2/re2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/regexp.cc -o re2google/re2/regexp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/set.cc -o re2google/re2/set.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/simplify.cc -o re2google/re2/simplify.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/stringpiece.cc -o re2google/re2/stringpiece.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/tostring.cc -o re2google/re2/tostring.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/unicode_casefold.cc -o re2google/re2/unicode_casefold.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/unicode_groups.cc -o re2google/re2/unicode_groups.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_re2proxy.cpp -o re2_re2proxy.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_regexp.cpp -o re2_regexp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_do_match.cpp -o re2_do_match.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_locate.cpp -o re2_locate.o re2_locate.cpp: In member function ‘virtual void {anonymous}::DoLocateAll::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_locate.cpp:74:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for (int row = 0; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_get_options.cpp -o re2_get_options.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_match.cpp -o re2_match.o re2_match.cpp: In member function ‘virtual void {anonymous}::DoMatchAll::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_match.cpp:143:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 143 | for (int row = 0; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_detect.cpp -o re2_detect.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_match_cpp.cpp -o re2_match_cpp.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_split.cpp -o re2_split.o re2_split.cpp: In member function ‘virtual void {anonymous}::DoSplit::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_split.cpp:36:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 36 | for (; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_extract_replace.cpp -o re2_extract_replace.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_replace.cpp -o re2_replace.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_quote_meta.cpp -o re2_quote_meta.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_max_submatch.cpp -o re2_max_submatch.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_capturing_group.cpp -o re2_capturing_group.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_random_text.cpp -o re2_random_text.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o re2.so re2google/util/rune.o re2google/util/strutil.o re2google/re2/bitstate.o re2google/re2/compile.o re2google/re2/dfa.o re2google/re2/filtered_re2.o re2google/re2/mimics_pcre.o re2google/re2/nfa.o re2google/re2/onepass.o re2google/re2/parse.o re2google/re2/perl_groups.o re2google/re2/prefilter.o re2google/re2/prefilter_tree.o re2google/re2/prog.o re2google/re2/re2.o re2google/re2/regexp.o re2google/re2/set.o re2google/re2/simplify.o re2google/re2/stringpiece.o re2google/re2/tostring.o re2google/re2/unicode_casefold.o re2google/re2/unicode_groups.o RcppExports.o re2_re2proxy.o re2_regexp.o re2_do_match.o re2_locate.o re2_get_options.o re2_match.o re2_detect.o re2_match_cpp.o re2_split.o re2_extract_replace.o re2_replace.o re2_quote_meta.o re2_max_submatch.o re2_capturing_group.o re2_random_text.o -pthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7ErrDS/R.INSTALL66a676523c25e/re2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-re2/00new/re2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (re2) checking nc_2026.2.20.tar.gz ... checking slurm_2025.4.9.tar.gz ... checking atime_2025.9.30.tar.gz ... checking aum_2024.6.19.tar.gz ... checking mlr3resampling_2025.11.19.tar.gz ... Depends: Package: nc Depends: R (>= 2.14) Imports: data.table (>= 1.15.0) Timings: user system elapsed nc 58.562 6.179 67.839 Results: Check status summary: OK Source packages 1 Reverse depends 4 Check results summary: nc ... OK rdepends_atime ... OK rdepends_aum ... OK rdepends_mlr3resampling ... OK rdepends_slurm ... OK