downloading reverse dependencies ... downloading BoneDensityMapping_0.1.2.tar.gz ... ok downloading nat.nblast_1.6.7.tar.gz ... ok downloading nat.templatebrains_1.1.tar.gz ... ok downloading RIA_1.7.2.tar.gz ... ok installing dependencies ‘alphashape3d’, ‘dendroextras’, ‘nat’, ‘nat.utils’, ‘oro.dicom’, ‘ptinpoly’ begin installing package ‘nat.utils’ begin installing package ‘alphashape3d’ begin installing package ‘ptinpoly’ begin installing package ‘dendroextras’ begin installing package ‘oro.dicom’ * installing *source* package ‘dendroextras’ ... ** this is package ‘dendroextras’ version ‘0.2.3’ ** package ‘dendroextras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendroextras) * installing *source* package ‘nat.utils’ ... ** this is package ‘nat.utils’ version ‘0.6.1’ ** package ‘nat.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nat.utils) begin installing package ‘nat’ * installing *source* package ‘oro.dicom’ ... ** this is package ‘oro.dicom’ version ‘0.5.3’ ** package ‘oro.dicom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oro.dicom) * installing *source* package ‘alphashape3d’ ... ** this is package ‘alphashape3d’ version ‘1.3.2’ ** package ‘alphashape3d’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnHkBVi/R.INSTALL21865534da215e/alphashape3d/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alphashape3d.c -o alphashape3d.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c insideashape.c -o insideashape.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surfaceNormals.c -o surfaceNormals.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alphashape3d.so alphashape3d.o init.o insideashape.o surfaceNormals.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnHkBVi/R.INSTALL21865534da215e/alphashape3d/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-alphashape3d/00new/alphashape3d/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alphashape3d) * installing *source* package ‘ptinpoly’ ... ** this is package ‘ptinpoly’ version ‘2.8’ ** package ‘ptinpoly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFflGkg/R.INSTALL21865826bd4628/ptinpoly/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PtInPoly_031009A.cc -o PtInPoly_031009A.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kodtree.cc -o kodtree.o kodtree.cc: In function ‘void sort1ShellFromaTri(int, double (*)[3], int, int (*)[3], int, int (*)[3])’: kodtree.cc:825:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 825 | if(tnb < 0) throw(7); /* JMM : 8/17/2014 : Fix Seg Fault as per B. Ripley and J. Liu */ | ^~ kodtree.cc:826:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 826 | if(trisort[tnb]==0){ | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pinpolyhedronA.cc -o pinpolyhedronA.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ptinpoly.so PtInPoly_031009A.o kodtree.o pinpolyhedronA.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFflGkg/R.INSTALL21865826bd4628/ptinpoly/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ptinpoly/00new/ptinpoly/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptinpoly) * installing *source* package ‘nat’ ... ** this is package ‘nat’ version ‘1.8.25’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nat) checking nat_1.8.25.tar.gz ... checking BoneDensityMapping_0.1.2.tar.gz ... checking nat.nblast_1.6.7.tar.gz ... checking nat.templatebrains_1.1.tar.gz ... checking RIA_1.7.2.tar.gz ... Depends: Package: nat Depends: R (>= 2.15.1), rgl (>= 0.98.1) Imports: nabor, igraph (>= 1.3.0), methods, filehash (>= 2.3), digest, nat.utils (>= 0.4.2), plyr, yaml Timings: user system elapsed nat 90.685 7.756 101.916 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 2 2 Check results summary: nat ... NOTE * checking CRAN incoming feasibility ... [7s/9s] NOTE rdepends_BoneDensityMapping ... OK rdepends_nat.nblast ... NOTE * checking Rd cross-references ... NOTE rdepends_nat.templatebrains ... NOTE * checking Rd cross-references ... NOTE rdepends_RIA ... OK