* installing *source* package ‘naryn’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.8 (11)’
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c BinFinder.cpp -o BinFinder.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c BinsManager.cpp -o BinsManager.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c BufferedFile.cpp -o BufferedFile.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRDb.cpp -o EMRDb.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRIdTimeInterval.cpp -o EMRIdTimeInterval.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRIteratorFilterItem.cpp -o EMRIteratorFilterItem.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRLogicalTrack.cpp -o EMRLogicalTrack.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRProgressReporter.cpp -o EMRProgressReporter.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRTimeConverter.cpp -o EMRTimeConverter.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRTimeInterval.cpp -o EMRTimeInterval.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRTimeStamp.cpp -o EMRTimeStamp.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c EMRTrack.cpp -o EMRTrack.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c FileUtils.cpp -o FileUtils.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRCovariance.cpp -o NRCovariance.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRDb.cpp -o NRDb.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRDist.cpp -o NRDist.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRExtract.cpp -o NRExtract.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRIdTimeInterval.cpp -o NRIdTimeInterval.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRIdsDist.cpp -o NRIdsDist.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRImport.cpp -o NRImport.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRIteratorFilter.cpp -o NRIteratorFilter.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRLogicalTrack.cpp -o NRLogicalTrack.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRLogicalTrackInfo.cpp -o NRLogicalTrackInfo.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRPoint.cpp -o NRPoint.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRQuantiles.cpp -o NRQuantiles.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRScreen.cpp -o NRScreen.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRSummary.cpp -o NRSummary.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTest.cpp -o NRTest.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTimeConverter.cpp -o NRTimeConverter.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTimeInterval.cpp -o NRTimeInterval.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTrack.cpp -o NRTrack.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTrackCreate.cpp -o NRTrackCreate.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTrackExpressionScanner.cpp -o NRTrackExpressionScanner.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRTrackExpressionVars.cpp -o NRTrackExpressionVars.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRUtils.cpp -o NRUtils.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c NRVtrack.cpp -o NRVtrack.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c TGLException.cpp -o TGLException.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c naryn-init.cpp -o naryn-init.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c naryn.cpp -o naryn.o
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1  -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c strutil.cpp -o strutil.o
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o naryn.so BinFinder.o BinsManager.o BufferedFile.o EMRDb.o EMRIdTimeInterval.o EMRIteratorFilterItem.o EMRLogicalTrack.o EMRProgressReporter.o EMRTimeConverter.o EMRTimeInterval.o EMRTimeStamp.o EMRTrack.o FileUtils.o NRCovariance.o NRDb.o NRDist.o NRExtract.o NRIdTimeInterval.o NRIdsDist.o NRImport.o NRIteratorFilter.o NRLogicalTrack.o NRLogicalTrackInfo.o NRPoint.o NRQuantiles.o NRScreen.o NRSummary.o NRTest.o NRTimeConverter.o NRTimeInterval.o NRTrack.o NRTrackCreate.o NRTrackExpressionScanner.o NRTrackExpressionVars.o NRUtils.o NRVtrack.o TGLException.o naryn-init.o naryn.o strutil.o -lpthread -shared -L/home/hornik/tmp/R-d-clang-18/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/naryn.Rcheck/00LOCK-naryn/00new/naryn/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (naryn)