* using log directory 'd:/RCompile/CRANincoming/R-devel/mycolorsTB.Rcheck'
* using R Under development (unstable) (2025-07-06 r88390 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mycolorsTB/DESCRIPTION' ... OK
* this is package 'mycolorsTB' version '0.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Paula Ruiz-Rodriguez <paula.ruiz.rodriguez@csic.es>'

New submission

Possibly misspelled words in DESCRIPTION:
  Mycobacterium (2:28, 7:74)

The Title field should be in title case. Current version is:
  'A Color Package for Mycobacterium tuberculosis Data'
In title case that is:
  'A Color Package for Mycobacterium Tuberculosis Data'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mycolorsTB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot_tb_cladogram: no visible binding for global variable '.data'
plot_tb_tree: no visible binding for global variable '.data'
view_palette: no visible binding for global variable '.data'
Undefined global functions or variables:
  .data
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'classicTB' 'mycolors' 'pathogenomics' 'plot_tb_cladogram'
  'plot_tb_tree' 'scale_color_classicTB' 'scale_color_mycolors'
  'scale_fill_classicTB' 'scale_fill_mycolors' 'tb_palette'
  'view_palette'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs