context("marginaleffects") test_that("data_grid gives expected output structure", { # Dataframe example simdat <- sim_mvgam(n_series = 3, prop_trend = 1, trend_model = GP(), mu = 1.5) out <- SW(data_grid(season = unique, year = mean, newdata = simdat$data_test)) expect_true(all(out$year == mean(simdat$data_test$year))) myfunc = function(x){ c(mean(x, na.rm = TRUE), max(x, na.rm = TRUE) + 22.4, min(x, na.rm = TRUE) - 11.7) } out <- data_grid(time = myfunc, newdata = simdat$data_test) expect_true(NROW(out) == 3) # A list example out <- data_grid(season = fivenum, year = mean, newdata = mvgam:::mvgam_example5$obs_data) expect_true(all.equal(names(out), names(mvgam:::mvgam_example5$obs_data))) expect_true(all(out$year == mean(mvgam:::mvgam_example5$obs_data$year))) }) test_that("get_data gives expected output structure", { plot_data <- get_data(mvgam:::mvgam_example2) obs_data <- mvgam:::mvgam_example2$obs_data # get_data should give the exact same data used for modelling, including # any NAs in the outcome variable expect_true(identical(data.frame(y = plot_data$y, season = plot_data$season, series = plot_data$series), data.frame(y = obs_data$y, season = obs_data$season, series = obs_data$series))) }) test_that("get_predict gives expected output structure", { preds <- get_predict(mvgam:::mvgam_example4) expect_equal(NROW(preds), NROW(mvgam:::mvgam_example4$obs_data)) preds <- get_predict(mvgam:::mvgam_example2) expect_equal(NROW(preds), NROW(mvgam:::mvgam_example2$obs_data)) }) test_that("averages give expected output structures", { skip_on_cran() ems <- avg_predictions(mvgam:::mvgam_example3) expect_equal(NROW(ems), 1) expect_true(all(c("estimate", "conf.low", "conf.high") %in% colnames(ems))) ems <- avg_predictions(mvgam:::mvgam_example4, variables = list(season = c(1, 6, 12))) expect_equal(NROW(ems), 3) expect_true(all(c("season", "estimate", "conf.low", "conf.high") %in% colnames(ems))) ems <- avg_predictions(mvgam:::mvgam_example5, variables = list(season = c(1, 6, 12))) expect_equal(NROW(ems), 3) expect_true(all(c("season", "estimate", "conf.low", "conf.high") %in% colnames(ems))) ems <- predictions(mvgam:::mvgam_example2, by = 'series') expect_equal(NROW(ems), nlevels(mvgam:::mvgam_example3$obs_data$series)) })