* using log directory 'd:/RCompile/CRANincoming/R-devel/mvgam.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86441 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mvgam/DESCRIPTION' ... OK
* this is package 'mvgam' version '1.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Nicholas J Clark <nicholas.j.clark1214@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  GAMs (10:33)
  MCMC (11:112)

Suggests or Enhances not in mainstream repositories:
  cmdstanr

Package has a VignetteBuilder field but no prebuilt vignette index.

The Description field contains
  <doi.org/10.1111/2041-210X.13974>.
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'cmdstanr'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mvgam' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'desktop.ini'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [47s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown package 'cmdstanr' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  'SS_model.svg' 'data_in_mvgam.Rmd' 'forecast_evaluation.Rmd'
  'mvgam_overview.Rmd' 'nmixtures.Rmd' 'shared_states.Rmd'
  'time_varying_effects.Rmd' 'trend_formulas.Rmd'
* checking examples ... [20s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [61s] OK
  Running 'testthat.R' [61s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... WARNING
Directory 'inst/doc' does not exist.
Package vignettes without corresponding single PDF/HTML:
  'data_in_mvgam.Rmd'
  'forecast_evaluation.Rmd'
  'mvgam_overview.Rmd'
  'nmixtures.Rmd'
  'shared_states.Rmd'
  'time_varying_effects.Rmd'
  'trend_formulas.Rmd'
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 2 WARNINGs, 4 NOTEs