downloading reverse dependencies ... downloading pcmabc_1.1.3.tar.gz ... ok downloading GLSME_1.0.5.tar.gz ... ok downloading PCMBase_1.2.14.tar.gz ... ok installing dependencies ‘distory’, ‘mvMORPH’, ‘mvSLOUCH’, ‘ouch’, ‘PCMBase’, ‘PCMBaseCpp’, ‘yuima’ also installing the dependency ‘calculus’ begin installing package ‘calculus’ begin installing package ‘ouch’ begin installing package ‘PCMBase’ begin installing package ‘mvMORPH’ begin installing package ‘distory’ * installing *source* package ‘ouch’ ... ** this is package ‘ouch’ version ‘2.20’ ** package ‘ouch’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzvG3Mt/R.INSTALL1264145d5a4916/ouch/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar-matrix.c -o covar-matrix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weight-matrix.c -o weight-matrix.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ouch.so covar-matrix.o init.o weight-matrix.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzvG3Mt/R.INSTALL1264145d5a4916/ouch/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ouch/00new/ouch/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ouch) * installing *source* package ‘distory’ ... ** this is package ‘distory’ version ‘1.4.5’ ** package ‘distory’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVMTrEy/R.INSTALL12641ce19e207/distory/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distory.c -o distory.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newick.cpp -o newick.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phydist_r.cpp -o phydist_r.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treedist-stripped.cpp -o treedist-stripped.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o distory.so distory.o newick.o phydist_r.o treedist-stripped.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVMTrEy/R.INSTALL12641ce19e207/distory/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distory/00new/distory/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distory) * installing *source* package ‘calculus’ ... ** this is package ‘calculus’ version ‘1.1.0’ ** package ‘calculus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ6VDSA/R.INSTALL12641a735d88d7/calculus/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calculus.cpp -o calculus.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o calculus.so RcppExports.o calculus.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ6VDSA/R.INSTALL12641a735d88d7/calculus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-calculus/00new/calculus/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (calculus) begin installing package ‘yuima’ * installing *source* package ‘PCMBase’ ... ** this is package ‘PCMBase’ version ‘1.2.14’ ** package ‘PCMBase’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PCMBase) begin installing package ‘PCMBaseCpp’ begin installing package ‘mvSLOUCH’ * installing *source* package ‘mvMORPH’ ... ** this is package ‘mvMORPH’ version ‘1.2.1’ ** package ‘mvMORPH’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNneM2p/R.INSTALL126416612f192c/mvMORPH/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_row.c -o chol_rpf_row.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_univ.c -o chol_rpf_univ.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar-matrix-simmap.c -o covar-matrix-simmap.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c givens.c -o givens.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kronecker.c -o kronecker.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvMORPH_init.c -o mvMORPH_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-mat.c -o mvmorph-covar-mat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou-sparse.c -o mvmorph-covar-ou-sparse.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou.c -o mvmorph-covar-ou.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph_ou_mat_rpf.c -o mvmorph_ou_mat_rpf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pic_loglik_mvmorph.c -o pic_loglik_mvmorph.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadprod.c -o quadprod.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c root2tip.c -o root2tip.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spherical.c -o spherical.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqrtMat.c -o sqrtMat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c time_serie_expectation.c -o time_serie_expectation.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weight-matrix-mvmorph.c -o weight-matrix-mvmorph.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvMORPH.so chol_rpf_row.o chol_rpf_univ.o covar-matrix-simmap.o givens.o kronecker.o mvMORPH_init.o mvmorph-covar-mat.o mvmorph-covar-ou-sparse.o mvmorph-covar-ou.o mvmorph_ou_mat_rpf.o pic_loglik_mvmorph.o quadprod.o root2tip.o spherical.o sqrtMat.o time_serie_expectation.o utils.o weight-matrix-mvmorph.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNneM2p/R.INSTALL126416612f192c/mvMORPH/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvMORPH/00new/mvMORPH/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvMORPH) * installing *source* package ‘mvSLOUCH’ ... ** this is package ‘mvSLOUCH’ version ‘2.7.7’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvSLOUCH) * installing *source* package ‘PCMBaseCpp’ ... ** this is package ‘PCMBaseCpp’ version ‘0.1.11’ ** package ‘PCMBaseCpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXCaF4m/R.INSTALL1265cc111ee322/PCMBaseCpp/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp.cpp -o Rcpp.o In file included from QuadraticPoly.h:27, from QuadraticPolyWhite.h:28, from Rcpp.cpp:30: SPLITT.h:2054: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2054 | _PRAGMA_OMP_SIMD SPLITT.h:2072: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2072 | _PRAGMA_OMP_SIMD SPLITT.h:2085: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2085 | _PRAGMA_OMP_SIMD SPLITT.h:2097: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2097 | _PRAGMA_OMP_SIMD SPLITT.h:2107: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2107 | _PRAGMA_OMP_SIMD SPLITT.h:2133: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2133 | #pragma omp parallel SPLITT.h:2135: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2135 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2146: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2146 | #pragma omp barrier SPLITT.h:2149: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2149 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2160: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2160 | #pragma omp barrier SPLITT.h:2163: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2163 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2179: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2179 | #pragma omp parallel SPLITT.h:2188: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2188 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2198: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2198 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2224: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2224 | #pragma omp parallel SPLITT.h:2264: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2264 | #pragma omp parallel SPLITT.h:2266: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2266 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2277: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2277 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2291: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2291 | #pragma omp parallel SPLITT.h:2293: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2293 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2301: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2301 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2312: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2312 | #pragma omp parallel SPLITT.h:2321: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2321 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2332: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2332 | #pragma omp barrier SPLITT.h:2335: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2335 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2344: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2344 | _PRAGMA_OMP_SIMD SPLITT.h:2358: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2358 | _PRAGMA_OMP_SIMD SPLITT.h:2376: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2376 | #pragma omp parallel SPLITT.h:2385: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2385 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2396: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2396 | #pragma omp barrier SPLITT.h:2399: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2399 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2409: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2409 | _PRAGMA_OMP_SIMD SPLITT.h:2424: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2424 | #pragma omp parallel SPLITT.h:2433: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2433 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2443: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 2443 | #pragma omp barrier SPLITT.h:2446: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2446 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2464: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2464 | _PRAGMA_OMP_SIMD SPLITT.h:2608: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2608 | _PRAGMA_OMP_SIMD SPLITT.h:2622: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2622 | _PRAGMA_OMP_SIMD SPLITT.h:2631: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas] 2631 | _PRAGMA_OMP_SIMD SPLITT.h:2639: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2639 | #pragma omp parallel SPLITT.h:2648: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2648 | _PRAGMA_OMP_FOR_SIMD SPLITT.h:2657: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2657 | _PRAGMA_OMP_FOR_SIMD QuadraticPoly.h: In instantiation of ‘bool PCMBaseCpp::IsDiagonal(const MatType&) [with MatType = arma::Mat]’: QuadraticPoly.h:94:16: required from ‘void PCMBaseCpp::DecomposeH(MatEigvalType&, CubeEigvecType&, CubeEigvecType&, const CubeHType&, arma::uword, double) [with MatEigvalType = arma::Mat >; CubeEigvecType = arma::Cube >; CubeHType = arma::Cube; arma::uword = unsigned int]’ 94 | if(IsDiagonal(H.slice(r))) { | ~~~~~~~~~~^~~~~~~~~~~~ QuadraticPolyOU.h:152:17: required from ‘arma::uword PCMBaseCpp::CondGaussianOU::SetParameter(const std::vector&, arma::uword) [with TreeType = SPLITT::OrderedTree; DataType = PCMBaseCpp::NumericTraitData; arma::uword = unsigned int]’ 152 | DecomposeH(lambda, P, P_1, H, r, threshold_SV_); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyOU.h:203:28: required from here 203 | cond_dist_.SetParameter(par, 0); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ QuadraticPoly.h:47:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 47 | for(int i = 0; i < X.n_rows; ++i) { | ~~^~~~~~~~~~ QuadraticPoly.h:48:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 48 | for(int j = i + 1; j < X.n_cols; ++j) { | ~~^~~~~~~~~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::White]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::White; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::White; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::White; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:265:53: required from here 265 | .method( "TraverseTree", &QuadraticPolyWhite::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::BM]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::BM; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::BM; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::BM; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:335:48: required from here 335 | .method( "TraverseTree", &QuadraticPolyBM::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::BM1D]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::BM1D; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::BM1D; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::BM1D; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:407:52: required from here 407 | .method( "TraverseTree", &QuadraticPolyBM1D::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::OU]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::OU; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::OU; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::OU; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:477:48: required from here 477 | .method( "TraverseTree", &QuadraticPolyOU::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::OU1D]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::OU1D; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::OU1D; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::OU1D; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:546:52: required from here 546 | .method( "TraverseTree", &QuadraticPolyOU1D::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::JOU]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::JOU; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::JOU; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::JOU; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:620:49: required from here 620 | .method( "TraverseTree", &QuadraticPolyJOU::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::DOU]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::DOU; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::DOU; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::DOU; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:689:49: required from here 689 | .method( "TraverseTree", &QuadraticPolyDOU::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::MixedGaussian]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::MixedGaussian; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::MixedGaussian; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::MixedGaussian; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:762:61: required from here 762 | .method( "TraverseTree", &QuadraticPolyMixedGaussian::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D]’: SPLITT.h:1931:46: required from ‘void SPLITT::PostOrderTraversal::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D; ModeType = SPLITT::PostOrderMode]’ 1931 | case ModeType::MULTI_THREAD_LOOP_VISITS: TraverseTreeMultiThreadLoopVisits(); break; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SPLITT.h:623:28: required from ‘SPLITT::TraversalTask::StateType SPLITT::TraversalTask::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D; StateType = arma::Col; ParameterType = std::vector; SPLITT::uint = unsigned int]’ 623 | algorithm_.TraverseTree(static_cast(mode)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::MixedGaussian1D; std::string = std::__cxx11::basic_string; ParameterType = std::vector; PCMBaseCpp::uint = unsigned int]’ 128 | taskObject_.TraverseTree(par, mode); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ Rcpp.cpp:834:63: required from here 834 | .method( "TraverseTree", &QuadraticPolyMixedGaussian1D::TraverseTree ) | ^~~~~~~~~~~~ SPLITT.h:2181:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable] 2181 | uint tid; | ^~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PCMBaseCpp.so Rcpp.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXCaF4m/R.INSTALL1265cc111ee322/PCMBaseCpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PCMBaseCpp/00new/PCMBaseCpp/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PCMBaseCpp) * installing *source* package ‘yuima’ ... ** this is package ‘yuima’ version ‘1.15.30’ ** package ‘yuima’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb7fESu/R.INSTALL12657827ba40d7/yuima/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c IntensityEval.cpp -o IntensityEval.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MpCN.cpp -o MpCN.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c PseudoLoglikCOGARCH.c -o PseudoLoglikCOGARCH.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ae.cpp -o ae.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c carmafilter.c -o carmafilter.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cce_functions.c -o cce_functions.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euler.c -o euler.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kalmanBucyFilter.cpp -o kalmanBucyFilter.o kalmanBucyFilter.cpp: In function ‘void calc_filter_mean_time_homogeneous_with_vcov_are(arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, const arma::vec&, double, arma::mat&)’: kalmanBucyFilter.cpp:69:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 69 | for (int i = 0; i < n_deltaY; i++) { | ~~^~~~~~~~~~ kalmanBucyFilter.cpp: In function ‘void calc_filter_mean_explicit(arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, const arma::vec&, double, arma::mat&)’: kalmanBucyFilter.cpp:111:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 111 | for (int i = 0; i < n_deltaY; i++) { | ~~^~~~~~~~~~ kalmanBucyFilter.cpp: In function ‘Rcpp::List calc_kalman_bucy_filter_no_are_no_time_homogeneous(arma::cube&, arma::mat&, arma::cube&, arma::cube&, arma::mat&, arma::cube&, arma::mat&, arma::vec&, double, arma::mat&, unsigned int)’: kalmanBucyFilter.cpp:140:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 140 | for (int i = 0; i < n_deltaY; i++) { | ~~^~~~~~~~~~ kalmanBucyFilter.cpp:159:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 159 | for (int j = 0; j < upsamp_rate; j++) { | ~~^~~~~~~~~~~~~ kalmanBucyFilter.cpp: In function ‘Rcpp::List calc_kalman_bucy_filter_time_homogeneous(arma::mat&, arma::vec&, arma::mat&, arma::mat&, arma::vec&, arma::mat&, arma::mat&, arma::vec&, double, arma::mat&, unsigned int)’: kalmanBucyFilter.cpp:220:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 220 | for (int i = 0; i < n_deltaY; i++) { | ~~^~~~~~~~~~ kalmanBucyFilter.cpp:231:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 231 | for (int j = 0; j < upsamp_rate; j++) { | ~~^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c minusquasilogl_W1andW2.cpp -o minusquasilogl_W1andW2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pseudoLogLikCogarchIrregularGrid.cpp -o pseudoLogLikCogarchIrregularGrid.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qmle_linear_state_space_model.cpp -o qmle_linear_state_space_model.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qmle_terms.cpp -o qmle_terms.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qmlecpp.cpp -o qmlecpp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c residual.cpp -o residual.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rng.c -o rng.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c yuima_init.c -o yuima_init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o yuima.so IntensityEval.o MpCN.o PseudoLoglikCOGARCH.o RcppExports.o ae.o carmafilter.o cce_functions.o euler.o kalmanBucyFilter.o minusquasilogl_W1andW2.o pseudoLogLikCogarchIrregularGrid.o qmle_linear_state_space_model.o qmle_terms.o qmlecpp.o residual.o rng.o yuima_init.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb7fESu/R.INSTALL12657827ba40d7/yuima/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-yuima/00new/yuima/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘simulate’ in package ‘yuima’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yuima) checking mvSLOUCH_2.7.7.tar.gz ... checking pcmabc_1.1.3.tar.gz ... checking GLSME_1.0.5.tar.gz ... checking PCMBase_1.2.14.tar.gz ... Depends: Package: mvSLOUCH Depends: R(>= 3.5.0), abind Imports: ape (>= 5.3), graphics, methods, mvtnorm, Matrix, ouch, PCMBase (>= 1.2.10), stats, matrixcalc Timings: user system elapsed mvSLOUCH 126.553 7.897 140.771 Results: Check status summary: NOTE Source packages 1 Reverse depends 3 Check results summary: mvSLOUCH ... NOTE * checking CRAN incoming feasibility ... [5s/7s] NOTE rdepends_GLSME ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_pcmabc ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_PCMBase ... NOTE * checking Rd cross-references ... NOTE Check results changes: Package: GLSME Check: CRAN incoming feasibility Old result: NOTE Package: pcmabc Check: CRAN incoming feasibility Old result: NOTE