* installing *source* package ‘mvMAPIT’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c MAPIT.cpp -o MAPIT.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c gsm/gsm.cpp -o gsm/gsm.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c logging/log.cpp -o logging/log.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mapit/davies.cpp -o mapit/davies.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mapit/normal.cpp -o mapit/normal.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mapit/projection.cpp -o mapit/projection.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mapit/pve.cpp -o mapit/pve.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mapit/util.cpp -o mapit/util.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mqs/mqs.cpp -o mqs/mqs.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-compare-to-original-mapit.cpp -o tests/test-compare-to-original-mapit.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-davies.cpp -o tests/test-davies.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-gsm.cpp -o tests/test-gsm.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-log.cpp -o tests/test-log.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-mqs.cpp -o tests/test-mqs.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-normal.cpp -o tests/test-normal.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-projection.cpp -o tests/test-projection.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-pve.cpp -o tests/test-pve.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-runner.cpp -o tests/test-runner.o
clang++-16  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppProgress/include' -I'/srv/hornik/tmp/CRAN/Library/RcppSpdlog/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c tests/test-util.cpp -o tests/test-util.o
clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvMAPIT.so MAPIT.o RcppExports.o gsm/gsm.o logging/log.o mapit/davies.o mapit/normal.o mapit/projection.o mapit/pve.o mapit/util.o mqs/mqs.o tests/test-compare-to-original-mapit.o tests/test-davies.o tests/test-gsm.o tests/test-log.o tests/test-mqs.o tests/test-normal.o tests/test-projection.o tests/test-pve.o tests/test-runner.o tests/test-util.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/mvMAPIT.Rcheck/00LOCK-mvMAPIT/00new/mvMAPIT/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvMAPIT)