R version 4.5.0 alpha (2025-03-24 r88048 ucrt) Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multinma) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()) Attaching package: 'multinma' The following objects are masked from 'package:stats': dgamma, pgamma, qgamma > > test_check("multinma") SAMPLING FOR MODEL 'normal' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.00045 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.5 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.009 seconds (Warm-up) Chain 1: 0.003 seconds (Sampling) Chain 1: 0.012 seconds (Total) Chain 1: SAMPLING FOR MODEL 'normal' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000329 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 3.29 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.005 seconds (Warm-up) Chain 2: 0.004 seconds (Sampling) Chain 2: 0.009 seconds (Total) Chain 2: SAMPLING FOR MODEL 'normal' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000321 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 3.21 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.013 seconds (Warm-up) Chain 3: 0.013 seconds (Sampling) Chain 3: 0.026 seconds (Total) Chain 3: SAMPLING FOR MODEL 'normal' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000325 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.25 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.012 seconds (Warm-up) Chain 4: 0.004 seconds (Sampling) Chain 4: 0.016 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 7 Chain 1: adapt_window = 38 Chain 1: term_buffer = 5 Chain 1: Chain 1: Iteration: 1 / 100 [ 1%] (Warmup) Chain 1: Iteration: 10 / 100 [ 10%] (Warmup) Chain 1: Iteration: 20 / 100 [ 20%] (Warmup) Chain 1: Iteration: 30 / 100 [ 30%] (Warmup) Chain 1: Iteration: 40 / 100 [ 40%] (Warmup) Chain 1: Iteration: 50 / 100 [ 50%] (Warmup) Chain 1: Iteration: 51 / 100 [ 51%] (Sampling) Chain 1: Iteration: 60 / 100 [ 60%] (Sampling) Chain 1: Iteration: 70 / 100 [ 70%] (Sampling) Chain 1: Iteration: 80 / 100 [ 80%] (Sampling) Chain 1: Iteration: 90 / 100 [ 90%] (Sampling) Chain 1: Iteration: 100 / 100 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.038 seconds (Warm-up) Chain 1: 0.045 seconds (Sampling) Chain 1: 0.083 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 4.5e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: There aren't enough warmup iterations to fit the Chain 2: three stages of adaptation as currently configured. Chain 2: Reducing each adaptation stage to 15%/75%/10% of Chain 2: the given number of warmup iterations: Chain 2: init_buffer = 7 Chain 2: adapt_window = 38 Chain 2: term_buffer = 5 Chain 2: Chain 2: Iteration: 1 / 100 [ 1%] (Warmup) Chain 2: Iteration: 10 / 100 [ 10%] (Warmup) Chain 2: Iteration: 20 / 100 [ 20%] (Warmup) Chain 2: Iteration: 30 / 100 [ 30%] (Warmup) Chain 2: Iteration: 40 / 100 [ 40%] (Warmup) Chain 2: Iteration: 50 / 100 [ 50%] (Warmup) Chain 2: Iteration: 51 / 100 [ 51%] (Sampling) Chain 2: Iteration: 60 / 100 [ 60%] (Sampling) Chain 2: Iteration: 70 / 100 [ 70%] (Sampling) Chain 2: Iteration: 80 / 100 [ 80%] (Sampling) Chain 2: Iteration: 90 / 100 [ 90%] (Sampling) Chain 2: Iteration: 100 / 100 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.05 seconds (Warm-up) Chain 2: 0.039 seconds (Sampling) Chain 2: 0.089 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 4.1e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: There aren't enough warmup iterations to fit the Chain 3: three stages of adaptation as currently configured. Chain 3: Reducing each adaptation stage to 15%/75%/10% of Chain 3: the given number of warmup iterations: Chain 3: init_buffer = 7 Chain 3: adapt_window = 38 Chain 3: term_buffer = 5 Chain 3: Chain 3: Iteration: 1 / 100 [ 1%] (Warmup) Chain 3: Iteration: 10 / 100 [ 10%] (Warmup) Chain 3: Iteration: 20 / 100 [ 20%] (Warmup) Chain 3: Iteration: 30 / 100 [ 30%] (Warmup) Chain 3: Iteration: 40 / 100 [ 40%] (Warmup) Chain 3: Iteration: 50 / 100 [ 50%] (Warmup) Chain 3: Iteration: 51 / 100 [ 51%] (Sampling) Chain 3: Iteration: 60 / 100 [ 60%] (Sampling) Chain 3: Iteration: 70 / 100 [ 70%] (Sampling) Chain 3: Iteration: 80 / 100 [ 80%] (Sampling) Chain 3: Iteration: 90 / 100 [ 90%] (Sampling) Chain 3: Iteration: 100 / 100 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.038 seconds (Warm-up) Chain 3: 0.045 seconds (Sampling) Chain 3: 0.083 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 2.9e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: There aren't enough warmup iterations to fit the Chain 4: three stages of adaptation as currently configured. Chain 4: Reducing each adaptation stage to 15%/75%/10% of Chain 4: the given number of warmup iterations: Chain 4: init_buffer = 7 Chain 4: adapt_window = 38 Chain 4: term_buffer = 5 Chain 4: Chain 4: Iteration: 1 / 100 [ 1%] (Warmup) Chain 4: Iteration: 10 / 100 [ 10%] (Warmup) Chain 4: Iteration: 20 / 100 [ 20%] (Warmup) Chain 4: Iteration: 30 / 100 [ 30%] (Warmup) Chain 4: Iteration: 40 / 100 [ 40%] (Warmup) Chain 4: Iteration: 50 / 100 [ 50%] (Warmup) Chain 4: Iteration: 51 / 100 [ 51%] (Sampling) Chain 4: Iteration: 60 / 100 [ 60%] (Sampling) Chain 4: Iteration: 70 / 100 [ 70%] (Sampling) Chain 4: Iteration: 80 / 100 [ 80%] (Sampling) Chain 4: Iteration: 90 / 100 [ 90%] (Sampling) Chain 4: Iteration: 100 / 100 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.036 seconds (Warm-up) Chain 4: 0.048 seconds (Sampling) Chain 4: 0.084 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.2e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.42 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0 seconds (Warm-up) Chain 1: 0.001 seconds (Sampling) Chain 1: 0.001 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 3.2e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.001 seconds (Warm-up) Chain 2: 0.004 seconds (Sampling) Chain 2: 0.005 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 3.1e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.001 seconds (Warm-up) Chain 3: 0.001 seconds (Sampling) Chain 3: 0.002 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 3.2e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.001 seconds (Warm-up) Chain 4: 0.005 seconds (Sampling) Chain 4: 0.006 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). [ FAIL 0 | WARN 0 | SKIP 22 | PASS 1092 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-add_integration.R:541:3', 'test-example_atrial_fibrillation.R:4:1', 'test-example_bcg_vaccine.R:4:1', 'test-example_blocker.R:4:1', 'test-example_diabetes.R:4:1', 'test-example_dietary_fat.R:4:1', 'test-example_hta_psoriasis.R:4:1', 'test-example_parkinsons.R:4:1', 'test-example_plaque_psoriasis.R:4:1', 'test-example_smoking.R:4:1', 'test-example_social_anxiety.R:4:1', 'test-example_statins.R:4:1', 'test-example_thrombolytics.R:4:1', 'test-example_transfusion.R:4:1', 'test-logitnorm.R:1:1', 'test-marginal_effects.R:65:1', 'test-nma.R:381:3', 'test-nodesplit.R:264:3', 'test-plot_nma_data.R:2:1', 'test-posterior_ranks.R:99:1', 'test-predict.R:110:1', 'test-relative_effects.R:65:1' [ FAIL 0 | WARN 0 | SKIP 22 | PASS 1092 ] Deleting unused snapshots: • plot_nma_data/atrial-fibrillation-network-star.svg • plot_nma_data/atrial-fibrillation-network.svg • plot_nma_data/bcg-vaccine-network.svg • plot_nma_data/blocker-network.svg • plot_nma_data/diabetes-network.svg • plot_nma_data/dietary-fat-network.svg • plot_nma_data/duplicated-agd-arms-network.svg • plot_nma_data/duplicated-agd-contrasts-network.svg • plot_nma_data/duplicated-ipd-arms-network.svg • plot_nma_data/hta-psoriasis-network.svg • plot_nma_data/ndmm-network.svg • plot_nma_data/parkinsons-arm-network.svg • plot_nma_data/parkinsons-contrast-network.svg • plot_nma_data/parkinsons-mixed-network.svg • plot_nma_data/plaque-psoriasis-network.svg • plot_nma_data/smoking-network.svg • plot_nma_data/statins-network.svg • plot_nma_data/thrombolytics-dias-network.svg • plot_nma_data/thrombolytics-network.svg • plot_nma_data/transfusion-network.svg > > proc.time() user system elapsed 115.03 3.45 118.57