R version 4.5.0 alpha (2025-03-23 r88038 ucrt) Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multinma) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()) Attaching package: 'multinma' The following objects are masked from 'package:stats': dgamma, pgamma, qgamma > > test_check("multinma") SAMPLING FOR MODEL 'normal' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000711 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 7.11 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.197 seconds (Warm-up) Chain 1: 0.008 seconds (Sampling) Chain 1: 0.205 seconds (Total) Chain 1: SAMPLING FOR MODEL 'normal' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000468 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 4.68 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.012 seconds (Warm-up) Chain 2: 0.011 seconds (Sampling) Chain 2: 0.023 seconds (Total) Chain 2: SAMPLING FOR MODEL 'normal' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000264 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.64 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.008 seconds (Warm-up) Chain 3: 0.004 seconds (Sampling) Chain 3: 0.012 seconds (Total) Chain 3: SAMPLING FOR MODEL 'normal' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000385 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 3.85 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.01 seconds (Warm-up) Chain 4: 0.004 seconds (Sampling) Chain 4: 0.014 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'survival_param' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: There aren't enough warmup iterations to fit the Chain 1: three stages of adaptation as currently configured. Chain 1: Reducing each adaptation stage to 15%/75%/10% of Chain 1: the given number of warmup iterations: Chain 1: init_buffer = 7 Chain 1: adapt_window = 38 Chain 1: term_buffer = 5 Chain 1: Chain 1: Iteration: 1 / 100 [ 1%] (Warmup) Chain 1: Iteration: 10 / 100 [ 10%] (Warmup) Chain 1: Iteration: 20 / 100 [ 20%] (Warmup) Chain 1: Iteration: 30 / 100 [ 30%] (Warmup) Chain 1: Iteration: 40 / 100 [ 40%] (Warmup) Chain 1: Iteration: 50 / 100 [ 50%] (Warmup) Chain 1: Iteration: 51 / 100 [ 51%] (Sampling) Chain 1: Iteration: 60 / 100 [ 60%] (Sampling) Chain 1: Iteration: 70 / 100 [ 70%] (Sampling) Chain 1: Iteration: 80 / 100 [ 80%] (Sampling) Chain 1: Iteration: 90 / 100 [ 90%] (Sampling) Chain 1: Iteration: 100 / 100 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.035 seconds (Warm-up) Chain 1: 0.036 seconds (Sampling) Chain 1: 0.071 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.5e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: There aren't enough warmup iterations to fit the Chain 2: three stages of adaptation as currently configured. Chain 2: Reducing each adaptation stage to 15%/75%/10% of Chain 2: the given number of warmup iterations: Chain 2: init_buffer = 7 Chain 2: adapt_window = 38 Chain 2: term_buffer = 5 Chain 2: Chain 2: Iteration: 1 / 100 [ 1%] (Warmup) Chain 2: Iteration: 10 / 100 [ 10%] (Warmup) Chain 2: Iteration: 20 / 100 [ 20%] (Warmup) Chain 2: Iteration: 30 / 100 [ 30%] (Warmup) Chain 2: Iteration: 40 / 100 [ 40%] (Warmup) Chain 2: Iteration: 50 / 100 [ 50%] (Warmup) Chain 2: Iteration: 51 / 100 [ 51%] (Sampling) Chain 2: Iteration: 60 / 100 [ 60%] (Sampling) Chain 2: Iteration: 70 / 100 [ 70%] (Sampling) Chain 2: Iteration: 80 / 100 [ 80%] (Sampling) Chain 2: Iteration: 90 / 100 [ 90%] (Sampling) Chain 2: Iteration: 100 / 100 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.047 seconds (Warm-up) Chain 2: 0.037 seconds (Sampling) Chain 2: 0.084 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 3.1e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: There aren't enough warmup iterations to fit the Chain 3: three stages of adaptation as currently configured. Chain 3: Reducing each adaptation stage to 15%/75%/10% of Chain 3: the given number of warmup iterations: Chain 3: init_buffer = 7 Chain 3: adapt_window = 38 Chain 3: term_buffer = 5 Chain 3: Chain 3: Iteration: 1 / 100 [ 1%] (Warmup) Chain 3: Iteration: 10 / 100 [ 10%] (Warmup) Chain 3: Iteration: 20 / 100 [ 20%] (Warmup) Chain 3: Iteration: 30 / 100 [ 30%] (Warmup) Chain 3: Iteration: 40 / 100 [ 40%] (Warmup) Chain 3: Iteration: 50 / 100 [ 50%] (Warmup) Chain 3: Iteration: 51 / 100 [ 51%] (Sampling) Chain 3: Iteration: 60 / 100 [ 60%] (Sampling) Chain 3: Iteration: 70 / 100 [ 70%] (Sampling) Chain 3: Iteration: 80 / 100 [ 80%] (Sampling) Chain 3: Iteration: 90 / 100 [ 90%] (Sampling) Chain 3: Iteration: 100 / 100 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.037 seconds (Warm-up) Chain 3: 0.032 seconds (Sampling) Chain 3: 0.069 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 2.1e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: There aren't enough warmup iterations to fit the Chain 4: three stages of adaptation as currently configured. Chain 4: Reducing each adaptation stage to 15%/75%/10% of Chain 4: the given number of warmup iterations: Chain 4: init_buffer = 7 Chain 4: adapt_window = 38 Chain 4: term_buffer = 5 Chain 4: Chain 4: Iteration: 1 / 100 [ 1%] (Warmup) Chain 4: Iteration: 10 / 100 [ 10%] (Warmup) Chain 4: Iteration: 20 / 100 [ 20%] (Warmup) Chain 4: Iteration: 30 / 100 [ 30%] (Warmup) Chain 4: Iteration: 40 / 100 [ 40%] (Warmup) Chain 4: Iteration: 50 / 100 [ 50%] (Warmup) Chain 4: Iteration: 51 / 100 [ 51%] (Sampling) Chain 4: Iteration: 60 / 100 [ 60%] (Sampling) Chain 4: Iteration: 70 / 100 [ 70%] (Sampling) Chain 4: Iteration: 80 / 100 [ 80%] (Sampling) Chain 4: Iteration: 90 / 100 [ 90%] (Sampling) Chain 4: Iteration: 100 / 100 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.027 seconds (Warm-up) Chain 4: 0.031 seconds (Sampling) Chain 4: 0.058 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.5e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 10 [ 10%] (Warmup) Chain 1: Iteration: 2 / 10 [ 20%] (Warmup) Chain 1: Iteration: 3 / 10 [ 30%] (Warmup) Chain 1: Iteration: 4 / 10 [ 40%] (Warmup) Chain 1: Iteration: 5 / 10 [ 50%] (Warmup) Chain 1: Iteration: 6 / 10 [ 60%] (Sampling) Chain 1: Iteration: 7 / 10 [ 70%] (Sampling) Chain 1: Iteration: 8 / 10 [ 80%] (Sampling) Chain 1: Iteration: 9 / 10 [ 90%] (Sampling) Chain 1: Iteration: 10 / 10 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.001 seconds (Warm-up) Chain 1: 0.002 seconds (Sampling) Chain 1: 0.003 seconds (Total) Chain 1: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 3.5e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 10 [ 10%] (Warmup) Chain 2: Iteration: 2 / 10 [ 20%] (Warmup) Chain 2: Iteration: 3 / 10 [ 30%] (Warmup) Chain 2: Iteration: 4 / 10 [ 40%] (Warmup) Chain 2: Iteration: 5 / 10 [ 50%] (Warmup) Chain 2: Iteration: 6 / 10 [ 60%] (Sampling) Chain 2: Iteration: 7 / 10 [ 70%] (Sampling) Chain 2: Iteration: 8 / 10 [ 80%] (Sampling) Chain 2: Iteration: 9 / 10 [ 90%] (Sampling) Chain 2: Iteration: 10 / 10 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.001 seconds (Warm-up) Chain 2: 0 seconds (Sampling) Chain 2: 0.001 seconds (Total) Chain 2: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 3.6e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 10 [ 10%] (Warmup) Chain 3: Iteration: 2 / 10 [ 20%] (Warmup) Chain 3: Iteration: 3 / 10 [ 30%] (Warmup) Chain 3: Iteration: 4 / 10 [ 40%] (Warmup) Chain 3: Iteration: 5 / 10 [ 50%] (Warmup) Chain 3: Iteration: 6 / 10 [ 60%] (Sampling) Chain 3: Iteration: 7 / 10 [ 70%] (Sampling) Chain 3: Iteration: 8 / 10 [ 80%] (Sampling) Chain 3: Iteration: 9 / 10 [ 90%] (Sampling) Chain 3: Iteration: 10 / 10 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.001 seconds (Warm-up) Chain 3: 0.001 seconds (Sampling) Chain 3: 0.002 seconds (Total) Chain 3: SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 3.4e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 10 [ 10%] (Warmup) Chain 4: Iteration: 2 / 10 [ 20%] (Warmup) Chain 4: Iteration: 3 / 10 [ 30%] (Warmup) Chain 4: Iteration: 4 / 10 [ 40%] (Warmup) Chain 4: Iteration: 5 / 10 [ 50%] (Warmup) Chain 4: Iteration: 6 / 10 [ 60%] (Sampling) Chain 4: Iteration: 7 / 10 [ 70%] (Sampling) Chain 4: Iteration: 8 / 10 [ 80%] (Sampling) Chain 4: Iteration: 9 / 10 [ 90%] (Sampling) Chain 4: Iteration: 10 / 10 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.001 seconds (Warm-up) Chain 4: 0.005 seconds (Sampling) Chain 4: 0.006 seconds (Total) Chain 4: TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3). TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4). [ FAIL 0 | WARN 0 | SKIP 22 | PASS 1092 ] ══ Skipped tests (22) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-add_integration.R:541:3', 'test-example_atrial_fibrillation.R:4:1', 'test-example_bcg_vaccine.R:4:1', 'test-example_blocker.R:4:1', 'test-example_diabetes.R:4:1', 'test-example_dietary_fat.R:4:1', 'test-example_hta_psoriasis.R:4:1', 'test-example_parkinsons.R:4:1', 'test-example_plaque_psoriasis.R:4:1', 'test-example_smoking.R:4:1', 'test-example_social_anxiety.R:4:1', 'test-example_statins.R:4:1', 'test-example_thrombolytics.R:4:1', 'test-example_transfusion.R:4:1', 'test-logitnorm.R:1:1', 'test-marginal_effects.R:65:1', 'test-nma.R:381:3', 'test-nodesplit.R:264:3', 'test-plot_nma_data.R:2:1', 'test-posterior_ranks.R:99:1', 'test-predict.R:110:1', 'test-relative_effects.R:65:1' [ FAIL 0 | WARN 0 | SKIP 22 | PASS 1092 ] Deleting unused snapshots: • plot_nma_data/atrial-fibrillation-network-star.svg • plot_nma_data/atrial-fibrillation-network.svg • plot_nma_data/bcg-vaccine-network.svg • plot_nma_data/blocker-network.svg • plot_nma_data/diabetes-network.svg • plot_nma_data/dietary-fat-network.svg • plot_nma_data/duplicated-agd-arms-network.svg • plot_nma_data/duplicated-agd-contrasts-network.svg • plot_nma_data/duplicated-ipd-arms-network.svg • plot_nma_data/hta-psoriasis-network.svg • plot_nma_data/ndmm-network.svg • plot_nma_data/parkinsons-arm-network.svg • plot_nma_data/parkinsons-contrast-network.svg • plot_nma_data/parkinsons-mixed-network.svg • plot_nma_data/plaque-psoriasis-network.svg • plot_nma_data/smoking-network.svg • plot_nma_data/statins-network.svg • plot_nma_data/thrombolytics-dias-network.svg • plot_nma_data/thrombolytics-network.svg • plot_nma_data/transfusion-network.svg > > proc.time() user system elapsed 121.01 3.43 124.62