R Under development (unstable) (2024-01-23 r85822 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(multinma)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())

Attaching package: 'multinma'

The following objects are masked from 'package:stats':

    dgamma, pgamma, qgamma

> 
> test_check("multinma")

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'normal' NOW (CHAIN 4).

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 2.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
Chain 1: Iteration: 10 / 100 [ 10%]  (Warmup)
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Chain 1: Iteration: 100 / 100 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.028 seconds (Warm-up)
Chain 1:                0.037 seconds (Sampling)
Chain 1:                0.065 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 2.5e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
Chain 2: 
Chain 2: WARNING: There aren't enough warmup iterations to fit the
Chain 2:          three stages of adaptation as currently configured.
Chain 2:          Reducing each adaptation stage to 15%/75%/10% of
Chain 2:          the given number of warmup iterations:
Chain 2:            init_buffer = 7
Chain 2:            adapt_window = 38
Chain 2:            term_buffer = 5
Chain 2: 
Chain 2: Iteration:  1 / 100 [  1%]  (Warmup)
Chain 2: Iteration: 10 / 100 [ 10%]  (Warmup)
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Chain 2: 
Chain 2:  Elapsed Time: 0.05 seconds (Warm-up)
Chain 2:                0.035 seconds (Sampling)
Chain 2:                0.085 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 2.1e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3: 
Chain 3: 
Chain 3: WARNING: There aren't enough warmup iterations to fit the
Chain 3:          three stages of adaptation as currently configured.
Chain 3:          Reducing each adaptation stage to 15%/75%/10% of
Chain 3:          the given number of warmup iterations:
Chain 3:            init_buffer = 7
Chain 3:            adapt_window = 38
Chain 3:            term_buffer = 5
Chain 3: 
Chain 3: Iteration:  1 / 100 [  1%]  (Warmup)
Chain 3: Iteration: 10 / 100 [ 10%]  (Warmup)
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Chain 3: Iteration: 100 / 100 [100%]  (Sampling)
Chain 3: 
Chain 3:  Elapsed Time: 0.035 seconds (Warm-up)
Chain 3:                0.033 seconds (Sampling)
Chain 3:                0.068 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 2.1e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4: 
Chain 4: 
Chain 4: WARNING: There aren't enough warmup iterations to fit the
Chain 4:          three stages of adaptation as currently configured.
Chain 4:          Reducing each adaptation stage to 15%/75%/10% of
Chain 4:          the given number of warmup iterations:
Chain 4:            init_buffer = 7
Chain 4:            adapt_window = 38
Chain 4:            term_buffer = 5
Chain 4: 
Chain 4: Iteration:  1 / 100 [  1%]  (Warmup)
Chain 4: Iteration: 10 / 100 [ 10%]  (Warmup)
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Chain 4: Iteration: 51 / 100 [ 51%]  (Sampling)
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Chain 4: Iteration: 90 / 100 [ 90%]  (Sampling)
Chain 4: Iteration: 100 / 100 [100%]  (Sampling)
Chain 4: 
Chain 4:  Elapsed Time: 0.031 seconds (Warm-up)
Chain 4:                0.028 seconds (Sampling)
Chain 4:                0.059 seconds (Total)
Chain 4: 

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 3.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: No variance estimation is
Chain 1:          performed for num_warmup < 20
Chain 1: 
Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
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Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.001 seconds (Warm-up)
Chain 1:                0.001 seconds (Sampling)
Chain 1:                0.002 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 2).
Chain 2: 
Chain 2: Gradient evaluation took 2.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2: 
Chain 2: 
Chain 2: WARNING: No variance estimation is
Chain 2:          performed for num_warmup < 20
Chain 2: 
Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
Chain 2: 
Chain 2:  Elapsed Time: 0 seconds (Warm-up)
Chain 2:                0.001 seconds (Sampling)
Chain 2:                0.001 seconds (Total)
Chain 2: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 3).
Chain 3: 
Chain 3: Gradient evaluation took 2.8e-05 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3: 
Chain 3: 
Chain 3: WARNING: No variance estimation is
Chain 3:          performed for num_warmup < 20
Chain 3: 
Chain 3: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 3: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 3: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 3: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 3: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 3: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 3: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 3: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 3: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 3: Iteration: 10 / 10 [100%]  (Sampling)
Chain 3: 
Chain 3:  Elapsed Time: 0.001 seconds (Warm-up)
Chain 3:                0 seconds (Sampling)
Chain 3:                0.001 seconds (Total)
Chain 3: 

SAMPLING FOR MODEL 'binomial_1par' NOW (CHAIN 4).
Chain 4: 
Chain 4: Gradient evaluation took 2.8e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4: 
Chain 4: 
Chain 4: WARNING: No variance estimation is
Chain 4:          performed for num_warmup < 20
Chain 4: 
Chain 4: Iteration: 1 / 10 [ 10%]  (Warmup)
Chain 4: Iteration: 2 / 10 [ 20%]  (Warmup)
Chain 4: Iteration: 3 / 10 [ 30%]  (Warmup)
Chain 4: Iteration: 4 / 10 [ 40%]  (Warmup)
Chain 4: Iteration: 5 / 10 [ 50%]  (Warmup)
Chain 4: Iteration: 6 / 10 [ 60%]  (Sampling)
Chain 4: Iteration: 7 / 10 [ 70%]  (Sampling)
Chain 4: Iteration: 8 / 10 [ 80%]  (Sampling)
Chain 4: Iteration: 9 / 10 [ 90%]  (Sampling)
Chain 4: Iteration: 10 / 10 [100%]  (Sampling)
Chain 4: 
Chain 4:  Elapsed Time: 0 seconds (Warm-up)
Chain 4:                0 seconds (Sampling)
Chain 4:                0 seconds (Total)
Chain 4: 

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 1).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 2).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 3).

TESTING GRADIENT FOR MODEL 'binomial_1par' NOW (CHAIN 4).
[ FAIL 0 | WARN 0 | SKIP 18 | PASS 1034 ]

══ Skipped tests (18) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-add_integration.R:541:3',
  'test-example_atrial_fibrillation.R:4:1', 'test-example_bcg_vaccine.R:4:1',
  'test-example_blocker.R:4:1', 'test-example_diabetes.R:4:1',
  'test-example_dietary_fat.R:4:1', 'test-example_hta_psoriasis.R:4:1',
  'test-example_parkinsons.R:4:1', 'test-example_plaque_psoriasis.R:4:1',
  'test-example_smoking.R:4:1', 'test-example_statins.R:4:1',
  'test-example_thrombolytics.R:4:1', 'test-example_transfusion.R:4:1',
  'test-nma.R:299:3', 'test-nodesplit.R:264:3', 'test-posterior_ranks.R:99:1',
  'test-predict.R:110:1', 'test-relative_effects.R:65:1'

[ FAIL 0 | WARN 0 | SKIP 18 | PASS 1034 ]
> 
> proc.time()
   user  system elapsed 
 104.57    3.23  107.81