* using log directory ‘/srv/hornik/tmp/CRAN_pretest/multilevelcoda.Rcheck’
* using R Under development (unstable) (2024-11-15 r87338)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘multilevelcoda/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘multilevelcoda’ version ‘1.3.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/9s] NOTE
Maintainer: ‘Flora Le <floralebui@gmail.com>’

New maintainer:
  Flora Le <floralebui@gmail.com>
Old maintainer(s):
  Flora Le <13florale@gmail.com>

Possibly misspelled words in DESCRIPTION:
  al (25:32)
  et (25:29)

Suggests or Enhances not in mainstream repositories:
  cmdstanr
Availability using Additional_repositories specification:
  cmdstanr   yes   https://mc-stan.org/r-packages/

The Description field contains
  <https://doi.org/10.48550/arXiv.2405.03985>.
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multilevelcoda’ can be installed ... [18s/18s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] WARNING
Error: package or namespace load failed for ‘multilevelcoda’:
 object 'var' not found whilst loading namespace 'multilevelcoda'
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* checking whether the package can be unloaded cleanly ... [3s/3s] WARNING
Error: package or namespace load failed for ‘multilevelcoda’:
 object 'var' not found whilst loading namespace 'multilevelcoda'
Execution halted
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] WARNING
Error: object 'var' not found whilst loading namespace 'multilevelcoda'
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... [4s/3s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Error: object 'var' not found whilst loading namespace 'multilevelcoda'
Call sequence:
4: stop(gettextf("object '%s' not found whilst loading namespace '%s'", 
       genname, package), call. = FALSE, domain = NA)
3: .registerS3method(fin[i, 1], fin[i, 2], fin[i, 3], fin[i, 4], 
       env)
2: registerS3methods(nsInfo$S3methods, package, env)
1: loadNamespace(package, lib.loc)
Execution halted
* checking S3 generic/method consistency ... NOTE
Mismatches for methods registered for non-generic:
var:
  function(x, y, na.rm, use)
var.complr:
  function(x, weight, ...)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/15s] NOTE
Error: object 'var' not found whilst loading namespace 'multilevelcoda'
Execution halted
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] ERROR
Running examples in ‘multilevelcoda-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: var.complr
> ### Title: Variance of compositions presented in a 'complr' object.
> ### Aliases: var.complr
> 
> ### ** Examples
> 
> cilr <- complr(data = mcompd, sbp = sbp, 
+                 parts = c("TST", "WAKE", "MVPA", "LPA", "SB"), 
+                 idvar = "ID")
> var.complr(cilr)
Error in var.complr(cilr) : could not find function "var.complr"
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [16s/11s] ERROR
  Running ‘testthat.R’ [16s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(data.table)
  > library(multilevelcoda)
  
  Attaching package: 'multilevelcoda'
  
  The following object is masked from 'package:base':
  
      sub
  
  > library(extraoperators)
  > library(brms)
  Loading required package: Rcpp
  Loading 'brms' package (version 2.22.0). Useful instructions
  can be found by typing help('brms'). A more detailed introduction
  to the package is available through vignette('brms_overview').
  
  Attaching package: 'brms'
  
  The following object is masked from 'package:stats':
  
      ar
  
  > 
  > test_check("multilevelcoda")
  Starting 2 test processes
  
  
  Error in `private$handle_error()`:
  ! testthat subprocess failed to start, stderr:
  Error: package or namespace load failed for 'multilevelcoda':
   object 'var' not found whilst loading namespace 'multilevelcoda'
  Caused by error:
  ! R session crashed with exit code 1
  Backtrace:
       ▆
    1. └─testthat::test_check("multilevelcoda")
    2.   └─testthat::test_dir(...)
    3.     └─testthat:::test_files(...)
    4.       └─testthat:::test_files_parallel(...)
    5.         ├─withr::with_dir(...)
    6.         │ └─base::force(code)
    7.         ├─testthat::with_reporter(...)
    8.         │ └─base::tryCatch(...)
    9.         │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   10.         │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11.         │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   12.         └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
   13.           └─queue$poll(Inf)
   14.             └─base::lapply(...)
   15.               └─testthat (local) FUN(X[[i]], ...)
   16.                 └─private$handle_error(msg, i)
   17.                   └─rlang::abort(...)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [4s/4s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 3 WARNINGs, 4 NOTEs