* using log directory ‘/srv/hornik/tmp/CRAN/multilevelcoda.Rcheck’
* using R Under development (unstable) (2024-06-28 r86850)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1)
    Debian flang-new version 18.1.8 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘multilevelcoda/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘multilevelcoda’ version ‘1.3.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/9s] NOTE
Maintainer: ‘Flora Le <13florale@gmail.com>’

Suggests or Enhances not in mainstream repositories:
  cmdstanr
Availability using Additional_repositories specification:
  cmdstanr   yes   https://mc-stan.org/r-packages/
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multilevelcoda’ can be installed ... [18s/18s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/3s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/16s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VarCorr.brmcoda.Rd: VarCorr.brmsfit
  bayes_factor.brmcoda.Rd: bayes_factor.brmsfit
  brmcoda.Rd: brmsformula, brm
  bsub.Rd: describe_posterior
  bsubmargins.Rd: describe_posterior
  coef.brmcoda.Rd: coef.brmsfit
  fitted.brmcoda.Rd: fitted.brmsfit
  fixef.brmcoda.Rd: fixef.brmsfit
  launch_shinystan.brmcoda.Rd: launch_shinystan.brmsfit
  mcmc_plot.brmcoda.Rd: mcmc_plot.brmsfit
  pairs.brmcoda.Rd: brmsfit, pairs.brmsfit
  plot.brmcoda.Rd: plot.brmsfit
  plot.substitution.Rd: ggplot
  predict.brmcoda.Rd: predict.brmsfit
  ranef.brmcoda.Rd: ranef.brmsfit
  residuals.brmcoda.Rd: residuals.brmsfit
  sub.Rd: describe_posterior
  submargins.Rd: describe_posterior
  substitution.Rd: describe_posterior
  summary.brmcoda.Rd: summary.brmsfit
  update.brmcoda.Rd: brmsformula, brm
  vcov.brmcoda.Rd: vcov.brmsfit
  wsub.Rd: describe_posterior
  wsubmargins.Rd: describe_posterior
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [17s/11s] OK
  Running ‘testthat.R’ [17s/11s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [4s/4s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs