* using log directory ‘/srv/hornik/tmp/CRAN_pretest/multiScaleR.Rcheck’
* using R Under development (unstable) (2025-07-29 r88464)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘multiScaleR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘multiScaleR’ version ‘0.4.2-0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Bill Peterman <Peterman.73@osu.edu>’

New submission

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/web/packages/insight/index.html
    From: inst/doc/multiScaleR_Guide.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname

The Title field should be in title case. Current version is:
  ‘Package for optimizing scales of effect’
In title case that is:
  ‘Package for Optimizing Scales of Effect’

The Description field should not start with the package name,
  'This package' or similar.

Size of tarball: 91012522 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .github
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  .github
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multiScaleR’ can be installed ... [34s/34s] OK
* used C compiler: ‘Debian clang version 19.1.7 (3+b1)’
* used C++ compiler: ‘Debian clang version 19.1.7 (3+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘README.Rmd’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [6s/6s] OK
* checking whether the package can be loaded with stated dependencies ... [6s/6s] OK
* checking whether the package can be unloaded cleanly ... [6s/6s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/6s] OK
* checking whether the namespace can be unloaded cleanly ... [6s/6s] OK
* checking loading without being on the library search path ... [6s/6s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/29s] NOTE
plot_marginal_effects : <anonymous>: no visible binding for global
  variable ‘fit’
plot_marginal_effects : <anonymous>: no visible binding for global
  variable ‘lwr’
plot_marginal_effects : <anonymous>: no visible binding for global
  variable ‘upr’
Undefined global functions or variables:
  fit lwr upr
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [75s/75s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
sim_dat_unmarked 55.904  0.056  55.988
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [47s/47s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 5 NOTEs