R Under development (unstable) (2025-07-28 r88462 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(multiDEGGs)
> 
> test_check("multiDEGGs")
Nested cross-validation with glmnet
No filter
Modifier:  multiDEGGs_filter 
Outer loop:  5-fold CV
Inner loop:  6-fold CV
100 observations, 14 predictors

       alpha  lambda n.filter
Fold 1   0.2 0.13438        7
Fold 2   0.1 0.10315        7
Fold 3   0.1 0.08673        7
Fold 4   0.1 0.06857        7
Fold 5   0.1 0.12505        7

Final parameters:
lambda   alpha  
 0.113   1.000  

Final coefficients:
 (Intercept) TNF:TNFRSF1A 
     1.50415     -0.08325 

Result:
       RMSE     R.squared   Pearson.r^2           MAE   
    0.47015       0.09262       0.09617       0.43666   
Loading required package: ggplot2
Loading required package: lattice
Nested cross-validation with glmnet
No filter
Modifier:  multiDEGGs_combined_filter 
Outer loop:  5-fold CV
Inner loop:  6-fold CV
100 observations, 14 predictors

       alpha  lambda n.filter
Fold 1   0.2 0.05694       21
Fold 2   0.2 0.05674       21
Fold 3   0.1 0.11795       21
Fold 4   0.1 0.09652       21
Fold 5   0.2 0.04998       21

Final parameters:
 lambda    alpha  
0.07416  0.10000  

Final coefficients:
(Intercept)      TGFBR1       TGFB3       MAPK3        FAN1      MAP2K2 
   1.600221   -0.030282   -0.021849    0.018565    0.018547    0.017882 
     FANCD2        AKT2        MTOR       IL1R2    TNFRSF1A       FASLG 
   0.017037   -0.016352   -0.013397   -0.012949   -0.010538    0.008308 
        FAS         TNF        IL1B 
   0.007477   -0.005731   -0.003087 

Result:
       RMSE     R.squared   Pearson.r^2           MAE   
    0.13237       0.92807       0.92981       0.09892   
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 76 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-plotting_functions.R:39:3'

[ FAIL 0 | WARN 0 | SKIP 1 | PASS 76 ]
> 
> proc.time()
   user  system elapsed 
  20.54    1.81   85.84