R Under development (unstable) (2023-06-12 r84534 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library("multcomp") Loading required package: mvtnorm Loading required package: survival Loading required package: TH.data Loading required package: MASS Attaching package: 'TH.data' The following object is masked from 'package:MASS': geyser > > set.seed(290875) > > data("warpbreaks") > fm1 <- aov(breaks ~ wool + tension, data = warpbreaks) > > TukeyHSD(fm1, "tension", ordered = FALSE) Tukey multiple comparisons of means 95% family-wise confidence level Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) $tension diff lwr upr p adj M-L -10.000000 -19.35342 -0.6465793 0.0336262 H-L -14.722222 -24.07564 -5.3688015 0.0011218 H-M -4.722222 -14.07564 4.6311985 0.4474210 > confint(glht(fm1, linfct = mcp(tension = "Tukey"))) Simultaneous Confidence Intervals Multiple Comparisons of Means: Tukey Contrasts Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) Quantile = 2.4156 95% family-wise confidence level Linear Hypotheses: Estimate lwr upr M - L == 0 -10.0000 -19.3542 -0.6458 H - L == 0 -14.7222 -24.0764 -5.3681 H - M == 0 -4.7222 -14.0764 4.6319 > summary(glht(fm1, linfct = mcp(tension = "Tukey"))) Simultaneous Tests for General Linear Hypotheses Multiple Comparisons of Means: Tukey Contrasts Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) Linear Hypotheses: Estimate Std. Error t value Pr(>|t|) M - L == 0 -10.000 3.872 -2.582 0.03369 * H - L == 0 -14.722 3.872 -3.802 0.00105 ** H - M == 0 -4.722 3.872 -1.219 0.44740 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Adjusted p values reported -- single-step method) > > TukeyHSD(fm1, "wool", ordered = FALSE) Tukey multiple comparisons of means 95% family-wise confidence level Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) $wool diff lwr upr p adj B-A -5.777778 -12.12841 0.5728505 0.0736137 > confint(glht(fm1, linfct = mcp(wool = "Tukey"))) Simultaneous Confidence Intervals Multiple Comparisons of Means: Tukey Contrasts Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) Quantile = 2.0086 95% family-wise confidence level Linear Hypotheses: Estimate lwr upr B - A == 0 -5.7778 -12.1284 0.5729 > summary(glht(fm1, linfct = mcp(wool = "Tukey"))) Simultaneous Tests for General Linear Hypotheses Multiple Comparisons of Means: Tukey Contrasts Fit: aov(formula = breaks ~ wool + tension, data = warpbreaks) Linear Hypotheses: Estimate Std. Error t value Pr(>|t|) B - A == 0 -5.778 3.162 -1.827 0.0736 . --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Adjusted p values reported -- single-step method) > > proc.time() user system elapsed 1.07 0.15 1.23