* using log directory ‘/srv/hornik/tmp/CRAN_pretest/msda.Rcheck’
* using R Under development (unstable) (2025-03-24 r88048)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘msda/DESCRIPTION’ ... OK
* this is package ‘msda’ version ‘1.0.4’
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Zou (9:233)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-04-20 as issues were not corrected
    despite reminders.

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "hzou@stat.umn.edu"))
as necessary.

Found the following (possibly) invalid URLs:
  URL: https://github.com/emeryyi/msda (moved to https://github.com/archer-yang-lab/msda)
    From: DESCRIPTION
          man/GDS1615.Rd
          man/cv.msda.Rd
          man/msda.Rd
          man/plot.msda.Rd
          man/predict.msda.Rd
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘msda’ can be installed ... [4s/4s] OK
* used C compiler: ‘Debian clang version 19.1.7 (3)’
* used Fortran compiler: ‘Debian flang-new version 19.1.7 (3)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... NOTE
Argument items with no description in Rd file 'msda.Rd':
  ‘sml’
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... [6s/6s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs