* using log directory 'd:/RCompile/CRANincoming/R-devel/mr.mash.alpha.Rcheck'
* using R Under development (unstable) (2025-12-05 r89107 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'mr.mash.alpha/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mr.mash.alpha' version '0.3.39'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Peter Carbonetto <peter.carbonetto@gmail.com>'

New submission

License components with restrictions and base license permitting such:
  MIT + file LICENSE
File 'LICENSE':
  YEAR: 2020-2025
  COPYRIGHT HOLDER: Fabio Morgante, Jason Willwerscheid, Gao Wang, Deborah Kunkel, Peter Carbonetto, Matthew Stephens
  ORGANIZATION: Fabio Morgante, Jason Willwerscheid, Gao Wang, Deborah Kunkel, Peter Carbonetto, Matthew Stephens

Possibly misspelled words in DESCRIPTION:
  Morgante (9:21)
  al (9:33)
  et (9:30)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'mr.mash.alpha' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [11s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
             user system elapsed
mr.mash.rss 29.18  10.99    4.33
mr.mash     33.60   2.51    2.33
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [125s] OK
  Running 'testthat.R' [125s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [67s] OK
* checking PDF version of manual ... [26s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs